BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2145
(20 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|GL582994.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583304.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 28 907
gb|DS990947.1| Homo sapiens SCAF_1112675837242 genomic scaf... 28 907
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 907
ref|NW_928052.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_922751.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NT_022171.15| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_030059.13| Homo sapiens chromosome 10 genomic contig... 28 907
ref|NW_001838821.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 907
1_0 1 aacaaacaaacagcgatgaa 20
CM000492 102007892 ..............c..... 102007873
GL582994 13755770 ................a... 13755789
GL583304 109449 ..............c..... 109468
CM000495 107394027 ................a... 107394008
DS990658 26582843 ................a... 26582862
DS990947 1214474 ..............c..... 1214455
CH003497 107244512 ..............c..... 107244493
CH003497 108192469 ..............c..... 108192488
CH003500 112628521 ................a... 112628502
CH003449 100940112 ..............c..... 100940093
CH003452 107614834 ................a... 107614815
NW_928052 10096024 ..............c..... 10096005
NW_001838952 26583079 ................a... 26583098
NW_922751 12781269 ................a... 12781250
NT_034772 20528417 ................a... 20528398
NT_022171 13006166 ..............c..... 13006147
NT_030059 39974964 ..............a..... 39974945
NW_001838821 1214472 ..............c..... 1214453
NC_000005 112214545 ................a... 112214526
NC_000002 108332337 ..............c..... 108332318
NC_000010 89170500 ..............a..... 89170481
AC_000137 107393629 ................a... 107393610
AC_000134 102007643 ..............c..... 102007624
AC_000048 108160098 ................a... 108160079
AC_000045 102541695 ..............c..... 102541676
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,980,942
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 1000.0: 24
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)