BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2146
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 29 422
gb|GL583130.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 29 422
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 29 422
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 29 422
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 29 422
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 29 422
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 29 422
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 29 422
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 29 422
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 29 422
gb|GL582989.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583021.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|DS990670.1| Homo sapiens SCAF_1112675837213 genomic scaf... 28 907
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 907
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 907
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 28 907
ref|NW_001838042.2| Homo sapiens chromosome 11 genomic cont... 28 907
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 907
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 907
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 907
1_0 1 cagagccatttggttcatgt 20
CM000493 25482423 ................... 25482405
CM000493 55424202 ...............g.... 55424221
GL583130 4091556 ................... 4091538
DS990655 40785207 ................... 40785225
DS990655 10843428 ...............g.... 10843409
CH003498 31234422 ................... 31234404
CH003498 61396389 ...............g.... 61396408
CH003450 25455480 ................... 25455462
CH003450 55531820 ...............g.... 55531839
NW_001838877 40785117 ................... 40785135
NW_001838877 10843400 ...............g.... 10843381
NW_921651 25473937 ................... 25473919
NW_921651 55341611 ...............g.... 55341630
NT_022517 25477061 ................... 25477043
NT_022517 55315398 ...............g.... 55315417
NC_000003 25537061 ................... 25537043
NC_000003 55375398 ...............g.... 55375417
AC_000135 25482545 ................... 25482527
AC_000135 55424262 ...............g.... 55424281
AC_000046 25473937 ................... 25473919
AC_000046 55341611 ...............g.... 55341630
GL582989 19977812 ...............g.... 19977793
GL583021 11733865 ............t....... 11733846
CM000501 100688196 ............t....... 100688215
DS990670 15997851 ............t....... 15997832
CH003506 105391923 ............t....... 105391942
CH003458 101432245 ............t....... 101432264
NW_925173 14791126 ............t....... 14791145
NT_033899 8320413 ............t....... 8320432
NW_001838042 15997880 ............t....... 15997861
NC_000011 104757997 ............t....... 104758016
AC_000143 100689129 ............t....... 100689148
AC_000054 101922226 ............t....... 101922245
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,491,304
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)