BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2160
(19 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583054.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|DS990719.1| Homo sapiens SCAF_1112675836373 genomic scaf... 29 422
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 29 422
ref|NW_001838934.1| Homo sapiens chromosome 5 genomic conti... 29 422
ref|NW_922607.1| Homo sapiens chromosome 5 genomic contig, ... 29 422
ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig,... 29 422
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 29 422
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 29 422
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 29 422
1_0 1 cacaccaaattatgtatgt 19
GL583054 6646059 ................... 6646077
CM000495 53382625 ................... 53382643
DS990719 6989725 ................... 6989743
CH003500 54728623 ................... 54728641
CH003452 53228581 ................... 53228599
NW_001838934 6989800 ................... 6989818
NW_922607 6980141 ................... 6980159
NT_006713 7004845 ................... 7004863
NC_000005 56410486 ................... 56410504
AC_000137 53382480 ................... 53382498
AC_000048 53364755 ................... 53364773
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 33,836,200
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)