BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2181
         (20 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|GL583047.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990661.1|  Homo sapiens SCAF_1112675837344 genomic scaf...    28     907
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
ref|NW_001838915.1|  Homo sapiens chromosome 4 genomic conti...    28     907
ref|NW_922162.1|  Homo sapiens chromosome 4 genomic contig, ...    28     907
ref|NT_016354.19|  Homo sapiens chromosome 4 genomic contig,...    28     907
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    28     907
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    28     907

1_0          1         aagagctgaaacaactatac 20
CM000494     112737859 ......a............. 112737840
GL583047     9607765   ......a............. 9607746
DS990661     41498909  ......a............. 41498890
CH003499     117077350 ......a............. 117077331
CH003451     112829408 ......a............. 112829389
NW_001838915 41498433  ......a............. 41498414
NW_922162    64119853  ......a............. 64119834
NT_016354    41550291  ......a............. 41550272
NC_000004    117002570 ......a............. 117002551
AC_000136    112736883 ......a............. 112736864
AC_000047    114294879 ......a............. 114294860

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,237,190
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)