BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2205
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000493.1|  Homo sapiens chromosome 3, whole genome shot...    29     422
gb|GL583130.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|DS990655.1|  Homo sapiens SCAF_1112675837088 genomic scaf...    29     422
gb|CH003498.1|  Homo sapiens chromosome 3, whole genome shot...    29     422
gb|CH003450.1|  Homo sapiens chromosome 3, whole genome shot...    29     422
ref|NW_001838877.2|  Homo sapiens chromosome 3 genomic conti...    29     422
ref|NW_921651.1|  Homo sapiens chromosome 3 genomic contig, ...    29     422
ref|NT_022517.18|  Homo sapiens chromosome 3 genomic contig,...    29     422
ref|NC_000003.11|  Homo sapiens chromosome 3, GRCh37.p2 prim...    29     422
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    29     422
ref|AC_000046.1|  Homo sapiens chromosome 3, alternate assem...    29     422

1_0          1        agagccatttggttcatgt 19
CM000493     25482423 ................... 25482405
GL583130     4091556  ................... 4091538
DS990655     40785207 ................... 40785225
CH003498     31234422 ................... 31234404
CH003450     25455480 ................... 25455462
NW_001838877 40785117 ................... 40785135
NW_921651    25473937 ................... 25473919
NT_022517    25477061 ................... 25477043
NC_000003    25537061 ................... 25537043
AC_000135    25482545 ................... 25482527
AC_000046    25473937 ................... 25473919

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 24,799,015
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)