BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2216
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|GL582986.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583048.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000510.1|  Homo sapiens chromosome 20, whole genome sho...    28     907
gb|DS990734.1|  Homo sapiens SCAF_1112675837251 genomic scaf...    28     907
gb|DS990978.1|  Homo sapiens SCAF_1112675837215 genomic scaf...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
ref|NW_927719.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NW_001838768.1|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NT_022184.15|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907

1_0          1        ggatggtgtttcttttggtc 20
CM000492     29539400 .c.................. 29539419
GL582986     21724157 .c.................. 21724138
GL583048     10129020 ............c....... 10129001
CM000510     57339643 ............c....... 57339624
DS990734     8629438  .c.................. 8629457
DS990978     516501   ............c....... 516520
CH003497     31565744 .c.................. 31565763
CH003449     29505975 .c.................. 29505994
NW_927719    29575491 .c.................. 29575510
NW_001838768 8629477  .c.................. 8629496
NT_022184    8620562  .c.................. 8620581
NC_000002    29798675 .c.................. 29798694
AC_000134    29539514 .c.................. 29539533
AC_000045    29643556 .c.................. 29643575

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 50,031,615
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 1000.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)