BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2223
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582996.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583172.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 28 907
gb|DS990889.1| Homo sapiens SCAF_1112675828959 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003464.1| Homo sapiens chromosome 17, whole genome sho... 28 907
ref|NW_926772.1| Homo sapiens chromosome 17 genomic contig,... 28 907
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_010799.15| Homo sapiens chromosome 17 genomic contig... 28 907
ref|NW_001838431.1| Homo sapiens chromosome 17 genomic cont... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 28 907
1_0 1 aacctttggagaagatactg 20
CM000494 153336229 .................a.. 153336248
GL582996 12374654 .................a.. 12374673
GL583172 2464907 ..............t..... 2464888
CM000507 28224955 ..............t..... 28224974
DS990657 17817558 .................a.. 17817577
DS990889 1617916 ..............t..... 1617935
CH003499 157476876 .................a.. 157476895
CH003512 30537906 ..............t..... 30537925
CH003451 154466040 .................a.. 154466059
CH003464 29110838 ..............t..... 29110857
NW_926772 3028416 ..............t..... 3028435
NW_001838921 17817480 .................a.. 17817499
NW_922217 37185118 .................a.. 37185137
NT_016354 82131788 .................a.. 82131807
NT_010799 6776103 ..............t..... 6776122
NW_001838431 1617917 ..............t..... 1617936
NC_000004 157584067 .................a.. 157584086
NC_000017 32039109 ..............t..... 32039128
AC_000136 153335241 .................a.. 153335260
AC_000149 28224337 ..............t..... 28224356
AC_000047 154927639 .................a.. 154927658
AC_000060 28949832 ..............t..... 28949851
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 30,356,670
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)