BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2225
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    29     348
gb|GL583113.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000499.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|DS990696.1|  Homo sapiens SCAF_1112675837234 genomic scaf...    28     907
gb|CH003504.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|CH003456.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
ref|NW_001839236.2|  Homo sapiens chromosome 9 genomic conti...    28     907
ref|NW_924539.1|  Homo sapiens chromosome 9 genomic contig, ...    28     907
ref|NT_008470.19|  Homo sapiens chromosome 9 genomic contig,...    28     907
ref|NC_000009.11|  Homo sapiens chromosome 9, GRCh37.p2 prim...    28     907
ref|AC_000141.1|  Homo sapiens chromosome 9, alternate assem...    28     907
ref|AC_000052.1|  Homo sapiens chromosome 9, alternate assem...    28     907

1_0          1         aacctacacctgaagaaccag 21
CH003497     107590984 ..t.................. 107591004
CH003497     107838513 ..t.................. 107838533
GL583113     879557    ..............c.....  879576
CM000499     74519336  ..............c.....  74519317
DS990696     14859826  ..............c.....  14859845
CH003504     79379556  ..............c.....  79379537
CH003456     72916519  ..............c.....  72916500
NW_001839236 14859811  ..............c.....  14859830
NW_924539    5132985   ..............c.....  5132966
NT_008470    34083931  ..............c.....  34083912
NC_000009    104919399 ..............c.....  104919380
AC_000141    74519930  ..............c.....  74519911
AC_000052    75423281  ..............c.....  75423262

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 24,795,511
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 1000.0: 12
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)