BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2226
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583014.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|DS990666.1| Homo sapiens SCAF_1112675837326 genomic scaf... 28 907
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|DS486028.1| Homo sapiens SCAF_1103279188381 genomic scaf... 28 907
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 28 907
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 28 907
ref|NW_001839071.2| Homo sapiens chromosome 7 genomic conti... 28 907
ref|NW_923640.1| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig,... 28 907
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 28 907
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 28 907
1_0 1 aaggatgtgctggttataca 20
GL583014 15016344 .........g.......... 15016325
CM000497 115746617 .........g.......... 115746598
DS990666 9908220 .........g.......... 9908239
CH003502 110732948 .........g.......... 110732929
DS486028 9908340 .........g.......... 9908359
CH003454 116628228 .........g.......... 116628209
BL000002 120865448 .........g.......... 120865429
NW_001839071 9908340 .........g.......... 9908359
NW_923640 18951119 .........g.......... 18951100
NT_007933 59415982 .........g.......... 59415963
NT_079596 20813353 .........g.......... 20813334
NC_000007 121383139 .........g.......... 121383120
AC_000139 115746174 .........g.......... 115746155
AC_000068 120777785 .........g.......... 120777766
AC_000050 116192368 .........g.......... 116192349
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 24,818,954
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 1000.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)