BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2230
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582981.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582999.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583040.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|DS990656.1| Homo sapiens SCAF_1112675837090 genomic scaf... 28 907
gb|DS990661.1| Homo sapiens SCAF_1112675837344 genomic scaf... 28 907
gb|DS990699.1| Homo sapiens SCAF_1112675837092 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 907
ref|NW_001838990.2| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_001838915.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 907
ref|NW_922162.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig... 28 907
ref|NW_001838060.2| Homo sapiens chromosome 12 genomic cont... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 907
1_0 1 aaggatgaggaaggcaattta 21
CM000494 80851230 ....a............... 80851249
GL582981 16455514 ..a................. 16455533
GL582999 12088705 ....a............... 12088686
GL583040 6062596 ..............a..... 6062577
CM000496 117802185 ..a................. 117802204
CM000502 65359103 ..............a..... 65359122
DS990656 37320924 ..a................. 37320905
DS990661 9612280 ....a............... 9612299
DS990699 8207293 ..............a..... 8207274
CH003499 83629578 ....a............... 83629597
CH003501 122599558 ..a................. 122599577
CH003507 68659472 ..............a..... 68659491
CH003451 81018292 ....a............... 81018311
CH003453 117101265 ..a................. 117101284
CH003459 65763023 ..............a..... 65763042
NW_001838990 37320695 ..a................. 37320676
NW_001838915 9612239 ....a............... 9612258
NW_923184 53032513 ..a................. 53032532
NW_925395 15596538 ..............a..... 15596557
NW_922162 32223845 ....a............... 32223864
NT_025741 24389030 ..a................. 24389049
NT_016354 9656435 ....a............... 9656454
NT_029419 30451987 ..............a..... 30452006
NW_001838060 8207278 ..............a..... 8207259
NC_000006 120219573 ..a................. 120219592
NC_000004 85108714 ....a............... 85108733
NC_000012 68308681 ..............a..... 68308700
AC_000138 117802203 ..a................. 117802222
AC_000136 80850689 ....a............... 80850708
AC_000144 65359299 ..............a..... 65359318
AC_000049 120963909 ..a................. 120963928
AC_000047 82398871 ....a............... 82398890
AC_000055 67972709 ..............a..... 67972728
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 31,170,327
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 1000.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)