BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2234
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 29 348
gb|DS990667.1| Homo sapiens SCAF_1112675837322 genomic scaf... 29 348
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 29 348
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 29 348
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 29 348
ref|NW_001839003.1| Homo sapiens chromosome 7 genomic conti... 29 348
ref|NW_923240.1| Homo sapiens chromosome 7 genomic contig, ... 29 348
ref|NT_007819.17| Homo sapiens chromosome 7 genomic contig,... 29 348
ref|NT_079592.2| Homo sapiens chromosome 7 genomic contig, ... 29 348
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 29 348
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 29 348
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 29 348
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 29 348
gb|GL583094.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
1_0 1 aaggataagtcagctcaatgc 21
CM000497 25269216 .....g............... 25269196
DS990667 19112023 .....g............... 19112003
CH003502 24080232 .....g............... 24080212
CH003454 25447601 .....g............... 25447581
BL000002 25089442 .....g............... 25089422
NW_001839003 19112015 .....g............... 19111995
NW_923240 18541143 .....g............... 18541123
NT_007819 25371170 .....g............... 25371150
NT_079592 25382430 .....g............... 25382410
NC_000007 25381170 .....g............... 25381150
AC_000139 25268790 .....g............... 25268770
AC_000068 25432430 .....g............... 25432410
AC_000050 25370278 .....g............... 25370258
GL583094 4283040 .....g..............m 4283060
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 21,585,855
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 1000.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)