BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2235
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582980.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|DS990705.1|  Homo sapiens SCAF_1112675837091 genomic scaf...    28     907
gb|CH003500.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    28     907
ref|NW_001838953.2|  Homo sapiens chromosome 5 genomic conti...    28     907
ref|NW_922784.1|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NT_029289.11|  Homo sapiens chromosome 5 genomic contig,...    28     907
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    28     907
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    28     907
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    28     907

1_0          2         acctacctctccagctagga 21
GL582980     17038943  ..a................. 17038924
CM000495     138464887 ..a................. 138464868
DS990705     11817596  ..a................. 11817615
CH003500     147615145 ..a................. 147615126
CH003452     140641176 ..a................. 140641157
NW_001838953 11817468  ..a................. 11817487
NW_922784    17027300  ..a................. 17027281
NT_029289    4480987   ..a................. 4480968
NC_000005    143318060 ..a................. 143318041
AC_000137    138464777 ..a................. 138464758
AC_000048    139399284 ..a................. 139399265

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,327,545
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)