BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2240
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 29 348
gb|GL582997.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|DS990703.1| Homo sapiens SCAF_1112675837104 genomic scaf... 29 348
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 29 348
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 29 348
ref|NW_001838859.2| Homo sapiens chromosome 2 genomic conti... 29 348
ref|NW_921585.1| Homo sapiens chromosome 2 genomic contig, ... 29 348
ref|NT_022135.16| Homo sapiens chromosome 2 genomic contig,... 29 348
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 29 348
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 29 348
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 29 348
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583031.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583249.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|DS990814.1| Homo sapiens SCAF_1112675830791 genomic scaf... 28 907
gb|DS990879.1| Homo sapiens SCAF_1112675837107 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
ref|NW_926839.1| Homo sapiens chromosome 17 genomic contig,... 28 907
ref|NW_001838879.1| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838437.2| Homo sapiens chromosome 17 genomic cont... 28 907
ref|NW_921751.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NT_022459.15| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 28 907
1_0 1 aatcacagatgctgttgattg 21
CM000492 130749819 .....a............... 130749799
GL582997 5748883 .....a............... 5748863
DS990703 10939582 .....a............... 10939602
CH003497 140434765 .....a............... 140434745
CH003449 129894746 .....a............... 129894726
NW_001838859 10939614 .....a............... 10939634
NW_921585 6661499 .....a............... 6661479
NT_022135 28506897 .....a............... 28506877
NC_000002 138758234 .....a............... 138758214
AC_000134 130749742 .....a............... 130749722
AC_000045 132471696 .....a............... 132471676
CM000493 88054164 ..................g. 88054183
GL583031 12215382 ..................g. 12215401
GL583249 756123 ......t............. 756142
CM000507 37932839 ......t............. 37932858
DS990814 1130814 ..................g. 1130833
DS990879 1365765 ......t............. 1365746
CH003498 95291774 ..................g. 95291793
CH003512 41669052 ......t............. 41669071
CH003450 88258374 ..................g. 88258393
NW_926839 763665 ......t............. 763684
NW_001838879 1130796 ..................g. 1130815
NW_001838437 1365869 ......t............. 1365850
NW_921751 12482962 ..................g. 12482981
NT_022459 21770001 ..................g. 21770020
NT_010783 7442677 ......t............. 7442696
NC_000003 88040271 ..................g. 88040290
NC_000017 42168525 ......t............. 42168544
AC_000135 88053998 ..................g. 88054017
AC_000149 37932458 ......t............. 37932477
AC_000046 88794372 ..................g. 88794391
AC_000060 38876624 ......t............. 38876643
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,221,256
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 1000.0: 32
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 32
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)