BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2241
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582990.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583014.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583084.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|DS990666.1| Homo sapiens SCAF_1112675837326 genomic scaf... 28 907
gb|DS990671.1| Homo sapiens SCAF_1112675837203 genomic scaf... 28 907
gb|DS990714.1| Homo sapiens SCAF_1112675837113 genomic scaf... 28 907
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|DS990773.1| Homo sapiens SCAF_1112675837168 genomic scaf... 28 907
gb|DS486028.1| Homo sapiens SCAF_1103279188381 genomic scaf... 28 907
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 907
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 28 907
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003464.1| Homo sapiens chromosome 17, whole genome sho... 28 907
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 28 907
ref|NW_925884.1| Homo sapiens chromosome 15 genomic contig,... 28 907
ref|NW_926918.1| Homo sapiens chromosome 17 genomic contig,... 28 907
ref|NW_001839071.2| Homo sapiens chromosome 7 genomic conti... 28 907
ref|NW_001838454.2| Homo sapiens chromosome 17 genomic cont... 28 907
ref|NW_001839078.1| Homo sapiens chromosome 7 genomic conti... 28 907
ref|NW_923707.1| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NW_923640.1| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig,... 28 907
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 28 907
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 28 907
ref|NW_001838218.2| Homo sapiens chromosome 15 genomic cont... 28 907
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 28 907
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 28 907
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 907
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 907
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 28 907
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 28 907
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 28 907
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 907
1_0 1 aaccttacagagttgtagtac 21
GL582990 12235398 ..................g. 12235379
GL583014 13777546 .............t...... 13777527
GL583084 4904947 ..................a. 4904966
CM000497 114510112 .............t...... 114510093
CM000497 139079228 .................g.. 139079209
CM000505 34290851 ..................g. 34290832
CM000507 63627467 ..................a. 63627448
DS990666 11144725 .............t...... 11144744
DS990671 16900175 ..................g. 16900194
DS990714 7279722 ..................a. 7279741
CH003502 109510604 .............t...... 109510585
CH003502 134040912 .................g.. 134040893
DS990773 959498 .................g.. 959479
DS486028 11144886 .............t...... 11144905
CH003510 36626400 ..................g. 36626381
CH003512 68502905 ..................a. 68502886
CH003454 115389279 .............t...... 115389260
CH003454 140244771 .................g.. 140244752
CH003462 33778408 ..................g. 33778389
CH003464 67725591 ..................a. 67725572
BL000002 119628889 .............t...... 119628870
NW_925884 13455684 ..................g. 13455665
NW_926918 5319101 ..................a. 5319082
NW_001839071 11144886 .............t...... 11144905
NW_001838454 7279643 ..................a. 7279662
NW_001839078 959517 .................g.. 959498
NW_923707 939591 .................g.. 939572
NW_923640 17714838 .............t...... 17714819
NT_007933 58179423 .............t...... 58179404
NT_010783 33516073 ..................a. 33516054
NT_010194 28258146 ..................g. 28258127
NW_001838218 16900244 ..................g. 16900263
NT_079596 19577225 .............t...... 19577206
NT_079596 44374470 .................g.. 44374451
NC_000007 120146580 .............t...... 120146561
NC_000017 68241921 ..................a. 68241902
NC_000015 57467589 ..................g. 57467570
AC_000139 114509628 .............t...... 114509609
AC_000139 139079036 .................g.. 139079017
AC_000149 63627579 ..................a. 63627560
AC_000147 34290766 ..................g. 34290747
AC_000068 119541657 .............t...... 119541638
AC_000068 144338902 .................g.. 144338883
AC_000050 114956087 .............t...... 114956068
AC_000050 139673414 .................g.. 139673395
AC_000060 64813700 ..................a. 64813681
AC_000058 34357867 ..................g. 34357848
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 22,282,385
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 1000.0: 41
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 48
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)