BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2242
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583008.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|CM000501.1|  Homo sapiens chromosome 11, whole genome sho...    29     348
gb|DS990792.1|  Homo sapiens SCAF_1112675837086 genomic scaf...    29     348
gb|CH003506.1|  Homo sapiens chromosome 11, whole genome sho...    29     348
gb|CH003458.1|  Homo sapiens chromosome 11, whole genome sho...    29     348
ref|NW_925106.1|  Homo sapiens chromosome 11 genomic contig,...    29     348
ref|NT_167190.1|  Homo sapiens chromosome 11 genomic contig,...    29     348
ref|NW_001838025.2|  Homo sapiens chromosome 11 genomic cont...    29     348
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    29     348
ref|AC_000143.1|  Homo sapiens chromosome 11, alternate asse...    29     348
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    29     348

1_0          1        aagatgttaactgcactgatg 21
GL583008     10887458 ...............g..... 10887478
CM000501     63568194 ...............g..... 63568174
DS990792     1834026  ...............g..... 1834046
CH003506     66281741 ...............g..... 66281721
CH003458     65744928 ...............g..... 65744908
NW_925106    12920547 ...............g..... 12920527
NT_167190    12545066 ...............g..... 12545046
NW_001838025 1834053  ...............g..... 1834073
NC_000011    67239271 ...............g..... 67239251
AC_000143    63568832 ...............g..... 63568812
AC_000054    64572471 ...............g..... 64572451

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,164,378
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)