BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2246
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    29     348
gb|DS990657.1|  Homo sapiens SCAF_1112675837360 genomic scaf...    29     348
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    29     348
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    29     348
ref|NW_001838921.1|  Homo sapiens chromosome 4 genomic conti...    29     348
ref|NW_922217.1|  Homo sapiens chromosome 4 genomic contig, ...    29     348
ref|NT_016354.19|  Homo sapiens chromosome 4 genomic contig,...    29     348
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    29     348
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    29     348
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    29     348

1_0          1         aattattatgagatgttggct 21
CM000494     152768549 ........a............ 152768529
DS990657     17249878  ........a............ 17249858
CH003499     156913441 ........a............ 156913421
CH003451     153896587 ........a............ 153896567
NW_001838921 17249810  ........a............ 17249790
NW_922217    36617861  ........a............ 36617841
NT_016354    81564256  ........a............ 81564236
NC_000004    157016535 ........a............ 157016515
AC_000136    152767571 ........a............ 152767551
AC_000047    154360382 ........a............ 154360362

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 38,675,202
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)