BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2248
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583030.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000499.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|DS990665.1|  Homo sapiens SCAF_1112675837347 genomic scaf...    28     907
gb|CH003456.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
ref|NW_001839149.2|  Homo sapiens chromosome 9 genomic conti...    28     907
ref|NW_924062.1|  Homo sapiens chromosome 9 genomic contig, ...    28     907
ref|NT_008413.18|  Homo sapiens chromosome 9 genomic contig,...    28     907
ref|NC_000009.11|  Homo sapiens chromosome 9, GRCh37.p2 prim...    28     907
ref|AC_000141.1|  Homo sapiens chromosome 9, alternate assem...    28     907
ref|AC_000052.1|  Homo sapiens chromosome 9, alternate assem...    28     907

1_0          1        aaattactacagacactggt 20
GL583030     7756239  ...........c........ 7756220
CM000499     22790326 ...........c........ 22790307
DS990665     13077643 ...........c........ 13077662
CH003456     22847548 ...........c........ 22847529
NW_001839149 13077448 ...........c........ 13077467
NW_924062    22649949 ...........c........ 22649930
NT_008413    22817128 ...........c........ 22817109
NC_000009    22827128 ...........c........ 22827109
AC_000141    22790773 ...........c........ 22790754
AC_000052    22765430 ...........c........ 22765411

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,934,918
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)