BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2249
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582982.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582983.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582991.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583017.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583034.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583115.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583247.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583336.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 28 907
gb|CM000514.1| Homo sapiens chromosome Y, whole genome shot... 28 907
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 28 907
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 28 907
gb|DS990672.1| Homo sapiens SCAF_1112675837227 genomic scaf... 28 907
gb|DS990701.1| Homo sapiens SCAF_1112675837295 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS990751.1| Homo sapiens SCAF_1112675837297 genomic scaf... 28 907
gb|DS990763.1| Homo sapiens SCAF_1112675836515 genomic scaf... 28 907
gb|DS990865.1| Homo sapiens SCAF_1112675837348 genomic scaf... 28 907
gb|DS990916.1| Homo sapiens SCAF_1112675834709 genomic scaf... 28 907
gb|DS990924.1| Homo sapiens SCAF_1112675837367 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 28 907
gb|CH003519.1| Homo sapiens chromosome Y, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 28 907
ref|NW_927672.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_927741.1| Homo sapiens chromosome Y genomic contig, ... 28 907
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001839132.1| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_001838981.2| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_001838578.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838882.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001842435.2| Homo sapiens chromosome Y genomic conti... 28 907
ref|NW_001839240.1| Homo sapiens chromosome 9 genomic conti... 28 907
ref|NW_001842443.1| Homo sapiens chromosome Y genomic conti... 28 907
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_923929.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NW_923073.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NW_924573.1| Homo sapiens chromosome 9 genomic contig, ... 28 907
ref|NT_011875.12| Homo sapiens chromosome Y genomic contig,... 28 907
ref|NT_035014.4| Homo sapiens chromosome 9 genomic contig, ... 28 907
ref|NT_008183.19| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000024.9| Homo sapiens chromosome Y, GRCh37.p2 prima... 28 907
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|AC_000156.1| Homo sapiens chromosome Y, alternate assem... 28 907
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000067.1| Homo sapiens chromosome Y, alternate assem... 28 907
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 907
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 aaaatgctacattcttcatct 21
CM000491 47099069 .....g.............. 47099050
CM000493 29331055 .............g...... 29331074
CM000493 118490249 .....g.............. 118490230
CM000494 181722818 .....g.............. 181722799
CM000494 184879760 ....a............... 184879779
GL582982 33404197 .....g.............. 33404216
GL582983 6870822 .....g.............. 6870841
GL582991 4417872 .....g.............. 4417891
GL583017 14541024 .....g.............. 14541005
GL583034 5070071 .........t.......... 5070052
GL583115 3591286 .............g...... 3591267
GL583247 751260 .....g.............. 751279
GL583336 1001457 ....a............... 1001438
CM000496 51883999 .........t.......... 51884018
CM000498 50001799 .....g.............. 50001818
CM000499 104052940 .....g.............. 104052959
CM000514 10018010 .....g.............. 10018029
CM000514 15528957 .....g.............. 15528938
DS990655 36936575 .............g...... 36936556
DS990657 46204147 .....g.............. 46204128
DS990657 49361089 ....a............... 49361108
DS990672 6400807 .....g.............. 6400826
DS990701 5384070 .........t.......... 5384051
CH003496 46972691 .....g.............. 46972710
DS990751 1853418 .....g.............. 1853437
DS990763 5762467 .....g.............. 5762486
DS990865 755439 .....g.............. 755420
DS990916 1346167 .....g.............. 1346186
DS990924 1017447 .....g.............. 1017428
CH003498 125387507 .....g.............. 125387488
CH003499 186089046 .....g.............. 186089027
CH003501 54215808 .........t.......... 54215827
CH003504 110292999 .....g.............. 110293018
CH003519 8945317 .....g.............. 8945336
CH003519 14600081 .....g.............. 14600062
CH003448 48205217 .....g.............. 48205198
CH003450 29316513 .............g...... 29316532
CH003450 118760644 .....g.............. 118760625
CH003451 182812625 .....g.............. 182812606
CH003453 52554818 .........t.......... 52554837
CH003455 50350024 .....g.............. 50350043
CH003456 102494615 .....g.............. 102494634
NW_927672 1416328 .....g.............. 1416347
NW_927741 408606 .....g.............. 408625
NW_001838877 31338603 .................a.. 31338622
NW_001838877 36936489 .............g...... 36936470
NW_001838921 46203694 .....g.............. 46203675
NW_001838921 49360527 ....a............... 49360546
NW_001839132 6400823 .....g.............. 6400842
NW_001838981 5384205 .........t.......... 5384186
NW_001838578 1853424 .....g.............. 1853443
NW_001838882 5762477 .....g.............. 5762496
NW_001842435 755434 .....g.............. 755415
NW_001839240 1346209 .....g.............. 1346228
NW_001842443 1017440 .....g.............. 1017421
NW_921807 27710940 .....g.............. 27710921
NW_922217 65552548 .....g.............. 65552529
NW_922217 68708211 ....a............... 68708230
NW_921351 23128160 .....g.............. 23128141
NW_921651 29326684 .............g...... 29326703
NW_923929 7657176 .....g.............. 7657195
NW_923073 25178068 .........t.......... 25178087
NW_924573 18587503 .....g.............. 18587522
NT_011875 1570348 .....g.............. 1570367
NT_011875 8021251 .....g.............. 8021232
NT_035014 1336460 .....g.............. 1336479
NT_008183 6398733 .....g.............. 6398752
NT_007592 51992624 .........t.......... 51992643
NT_016354 110515870 .....g.............. 110515851
NT_016354 113689295 ....a............... 113689314
NT_005612 27610624 .....g.............. 27610605
NT_022517 29329894 .............g...... 29329913
NT_032977 18953162 .....g.............. 18953143
NC_000001 48981244 .....g.............. 48981225
NC_000024 15368926 .....g.............. 15368945
NC_000024 21819829 .....g.............. 21819810
NC_000009 134559520 .....g.............. 134559539
NC_000008 54534332 .....g.............. 54534351
NC_000006 52052624 .........t.......... 52052643
NC_000004 185968149 .....g.............. 185968130
NC_000004 189141574 ....a............... 189141593
NC_000003 29389894 .............g...... 29389913
NC_000003 121115478 .....g.............. 121115459
AC_000156 10018746 .....g.............. 10018765
AC_000156 15529686 .....g.............. 15529667
AC_000141 104053506 .....g.............. 104053525
AC_000140 50002055 .....g.............. 50002074
AC_000138 51883693 .........t.......... 51883712
AC_000136 181721455 .....g.............. 181721436
AC_000136 184878288 ....a............... 184878307
AC_000135 29331173 .............g...... 29331192
AC_000135 34929059 .................a.. 34929040
AC_000135 118489898 .....g.............. 118489879
AC_000133 47099214 .....g.............. 47099195
AC_000067 5953716 .....g.............. 5953735
AC_000066 2351638 .....g.............. 2351657
AC_000052 105099672 .....g.............. 105099691
AC_000051 50524111 .....g.............. 50524130
AC_000049 53713747 .........t.......... 53713766
AC_000047 183295069 .....g.............. 183295050
AC_000047 186450732 ....a............... 186450751
AC_000046 29326684 .............g...... 29326703
AC_000046 119525270 .....g.............. 119525251
AC_000044 47267302 .....g.............. 47267283
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,744,102
Number of extensions: 105
Number of successful extensions: 105
Number of sequences better than 1000.0: 85
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 105
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)