BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2255
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582989.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000504.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|DS990735.1|  Homo sapiens SCAF_1112675837272 genomic scaf...    28     907
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
emb|AL954800.2|  Human chromosome 14 complete sequence             28     907
ref|NW_925561.1|  Homo sapiens chromosome 14 genomic contig,...    28     907
ref|NT_026437.12|  Homo sapiens chromosome 14 genomic contig...    28     907
ref|NW_001838115.2|  Homo sapiens chromosome 14 genomic cont...    28     907
ref|NC_000014.8|  Homo sapiens chromosome 14, GRCh37.p2 prim...    28     907
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    28     907
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    28     907

1_0          2         agactgatgaagctcagcct 21
GL582989     27102284  ......c............. 27102265
CM000504     82194388  ......c............. 82194369
DS990735     2686702   ......c............. 2686721
CH003509     83780571  ......c............. 83780552
CH003461     81775968  ......c............. 81775949
AL954800     81932504  ......c............. 81932485
NW_925561    48822082  ......c............. 48822063
NT_026437    83012463  ......c............. 83012444
NW_001838115 2686781   ......c............. 2686800
NC_000014    102012463 ......c............. 102012444
AC_000146    82195138  ......c............. 82195119
AC_000057    82067552  ......c............. 82067533

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,168,980
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 1000.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)