BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2263
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583254.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
gb|DS990971.1|  Homo sapiens SCAF_1112675831801 genomic scaf...    28     907
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    28     907
ref|NW_923829.1|  Homo sapiens chromosome 8 genomic contig, ...    28     907
ref|NT_023736.17|  Homo sapiens chromosome 8 genomic contig,...    28     907
ref|NW_001839101.1|  Homo sapiens chromosome 8 genomic conti...    28     907
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    28     907
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    28     907
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    28     907

1_0          1       aaccttgcccatcaggaaca 20
GL583254     1235831 .......g............ 1235850
CM000498     789386  .......g............ 789367
DS990971     789386  .......g............ 789367
CH003503     859405  .......g............ 859386
CH003455     790960  .......g............ 790941
NW_923829    786112  .......g............ 786093
NT_023736    943593  .......g............ 943574
NW_001839101 789231  .......g............ 789212
NC_000008    953593  .......g............ 953574
AC_000140    789231  .......g............ 789212
AC_000051    915208  .......g............ 915189

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,232,109
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)