BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2271
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|GL583067.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990754.1|  Homo sapiens SCAF_1112675837332 genomic scaf...    28     907
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
ref|NW_927841.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NW_001838573.1|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NT_004610.19|  Homo sapiens chromosome 1 genomic contig,...    28     907
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    28     907
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    28     907
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    28     907

1_0          2        atggccggagtcctttaaga 21
CM000491     18549124 ......t............. 18549105
GL583067     6315105  ......t............. 6315124
DS990754     1924711  ......t............. 1924692
CH003448     18938873 ......t............. 18938854
NW_927841    3106394  ......t............. 3106375
NW_001838573 1924656  ......t............. 1924637
NT_004610    6983227  ......t............. 6983208
NC_000001    20303139 ......t............. 20303120
AC_000133    18548925 ......t............. 18548906
AC_000044    18629951 ......t............. 18629932

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 18,536,769
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)