BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2294
(19 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582998.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 29 422
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 29 422
gb|DS990676.1| Homo sapiens SCAF_1112675837097 genomic scaf... 29 422
gb|DS990721.1| Homo sapiens SCAF_1112675837201 genomic scaf... 29 422
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 29 422
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 29 422
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 29 422
ref|NW_925517.1| Homo sapiens chromosome 13 genomic contig,... 29 422
ref|NW_925840.1| Homo sapiens chromosome 15 genomic contig,... 29 422
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 29 422
ref|NT_009952.14| Homo sapiens chromosome 13 genomic contig... 29 422
ref|NW_001838084.2| Homo sapiens chromosome 13 genomic cont... 29 422
ref|NW_001838214.2| Homo sapiens chromosome 15 genomic cont... 29 422
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 29 422
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 29 422
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 29 422
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 29 422
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 29 422
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 29 422
1_0 1 caaatactttgtcaccaaa 19
GL582998 6422401 ................... 6422419
CM000503 73922462 ................... 73922480
CM000505 11653728 ................... 11653746
DS990676 19033919 ................... 19033901
DS990721 9065648 ................... 9065630
CH003510 12253904 ................... 12253922
CH003460 74005439 ................... 74005457
CH003462 10693888 ................... 10693906
NW_925517 6427914 ................... 6427932
NW_925840 1877843 ................... 1877861
NT_010194 5576851 ................... 5576869
NT_009952 6417148 ................... 6417166
NW_001838084 19033797 ................... 19033779
NW_001838214 9065381 ................... 9065363
NC_000015 34786294 ................... 34786312
NC_000013 93327472 ................... 93327490
AC_000147 11653631 ................... 11653649
AC_000145 73923970 ................... 73923988
AC_000058 11595074 ................... 11595092
AC_000056 74174713 ................... 74174731
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,052,026
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 1000.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)