BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2294
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582998.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000503.1|  Homo sapiens chromosome 13, whole genome sho...    29     422
gb|CM000505.1|  Homo sapiens chromosome 15, whole genome sho...    29     422
gb|DS990676.1|  Homo sapiens SCAF_1112675837097 genomic scaf...    29     422
gb|DS990721.1|  Homo sapiens SCAF_1112675837201 genomic scaf...    29     422
gb|CH003510.1|  Homo sapiens chromosome 15, whole genome sho...    29     422
gb|CH003460.1|  Homo sapiens chromosome 13, whole genome sho...    29     422
gb|CH003462.1|  Homo sapiens chromosome 15, whole genome sho...    29     422
ref|NW_925517.1|  Homo sapiens chromosome 13 genomic contig,...    29     422
ref|NW_925840.1|  Homo sapiens chromosome 15 genomic contig,...    29     422
ref|NT_010194.17|  Homo sapiens chromosome 15 genomic contig...    29     422
ref|NT_009952.14|  Homo sapiens chromosome 13 genomic contig...    29     422
ref|NW_001838084.2|  Homo sapiens chromosome 13 genomic cont...    29     422
ref|NW_001838214.2|  Homo sapiens chromosome 15 genomic cont...    29     422
ref|NC_000015.9|  Homo sapiens chromosome 15, GRCh37.p2 prim...    29     422
ref|NC_000013.10|  Homo sapiens chromosome 13, GRCh37.p2 pri...    29     422
ref|AC_000147.1|  Homo sapiens chromosome 15, alternate asse...    29     422
ref|AC_000145.1|  Homo sapiens chromosome 13, alternate asse...    29     422
ref|AC_000058.1|  Homo sapiens chromosome 15, alternate asse...    29     422
ref|AC_000056.1|  Homo sapiens chromosome 13, alternate asse...    29     422
1_0          1        caaatactttgtcaccaaa 19
GL582998     6422401  ................... 6422419
CM000503     73922462 ................... 73922480
CM000505     11653728 ................... 11653746
DS990676     19033919 ................... 19033901
DS990721     9065648  ................... 9065630
CH003510     12253904 ................... 12253922
CH003460     74005439 ................... 74005457
CH003462     10693888 ................... 10693906
NW_925517    6427914  ................... 6427932
NW_925840    1877843  ................... 1877861
NT_010194    5576851  ................... 5576869
NT_009952    6417148  ................... 6417166
NW_001838084 19033797 ................... 19033779
NW_001838214 9065381  ................... 9065363
NC_000015    34786294 ................... 34786312
NC_000013    93327472 ................... 93327490
AC_000147    11653631 ................... 11653649
AC_000145    73923970 ................... 73923988
AC_000058    11595074 ................... 11595092
AC_000056    74174713 ................... 74174731
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,052,026
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 1000.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)