BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2309
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583148.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000506.1|  Homo sapiens chromosome 16, whole genome sho...    28     907
gb|DS990710.1|  Homo sapiens SCAF_1112675837089 genomic scaf...    28     907
gb|CH003511.1|  Homo sapiens chromosome 16, whole genome sho...    28     907
gb|CH003463.1|  Homo sapiens chromosome 16, whole genome sho...    28     907
ref|NW_926462.1|  Homo sapiens chromosome 16 genomic contig,...    28     907
ref|NW_001838290.1|  Homo sapiens chromosome 16 genomic cont...    28     907
ref|NT_010498.15|  Homo sapiens chromosome 16 genomic contig...    28     907
ref|NC_000016.9|  Homo sapiens chromosome 16, GRCh37.p2 prim...    28     907
ref|AC_000148.1|  Homo sapiens chromosome 16, alternate asse...    28     907
ref|AC_000059.1|  Homo sapiens chromosome 16, alternate asse...    28     907

1_0          1        gagggattcctagtgtgcaa 20
GL583148     4382664  .................g.. 4382683
CM000506     55410462 .................g.. 55410481
DS990710     13696726 .................g.. 13696745
CH003511     54134235 .................g.. 54134254
CH003463     50705249 .................g.. 50705268
NW_926462    23111183 .................g.. 23111202
NW_001838290 13696593 .................g.. 13696612
NT_010498    23146008 .................g.. 23146027
NC_000016    69531809 .................g.. 69531828
AC_000148    55409688 .................g.. 55409707
AC_000059    54046384 .................g.. 54046403

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 18,406,394
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)