BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2311
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583083.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000497.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|DS990667.1|  Homo sapiens SCAF_1112675837322 genomic scaf...    28     907
gb|CH003502.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|CH003454.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
tpg|BL000002.1|  TPA: Homo sapiens chromosome 7                    28     907
ref|NW_001839003.1|  Homo sapiens chromosome 7 genomic conti...    28     907
ref|NW_923240.1|  Homo sapiens chromosome 7 genomic contig, ...    28     907
ref|NT_007819.17|  Homo sapiens chromosome 7 genomic contig,...    28     907
ref|NT_079592.2|  Homo sapiens chromosome 7 genomic contig, ...    28     907
ref|NC_000007.13|  Homo sapiens chromosome 7, GRCh37.p2 prim...    28     907
ref|AC_000139.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000068.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000050.1|  Homo sapiens chromosome 7, alternate assem...    28     907

1_0          1        tccgggatcaggcaagtctg 20
GL583083     1909968  ............g....... 1909987
CM000497     37792382 ............g....... 37792401
DS990667     31635189 ............g....... 31635208
CH003502     36505513 ............g....... 36505532
CH003454     38241591 ............g....... 38241610
BL000002     37618262 ............g....... 37618281
NW_001839003 31635083 ............g....... 31635102
NW_923240    31067095 ............g....... 31067114
NT_007819    37901482 ............g....... 37901501
NT_079592    37899416 ............g....... 37899435
NC_000007    37911482 ............g....... 37911501
AC_000139    37791858 ............g....... 37791877
AC_000068    37949416 ............g....... 37949435
AC_000050    37896230 ............g....... 37896249

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 16,396,669
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 1000.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)