BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2313
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583019.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|CM000503.1|  Homo sapiens chromosome 13, whole genome sho...    29     348
gb|DS990692.1|  Homo sapiens SCAF_1112675837292 genomic scaf...    29     348
gb|DS486054.1|  Homo sapiens SCAF_1103279188347 genomic scaf...    29     348
gb|CH003508.1|  Homo sapiens chromosome 13, whole genome sho...    29     348
gb|CH003460.1|  Homo sapiens chromosome 13, whole genome sho...    29     348
ref|NW_925506.1|  Homo sapiens chromosome 13 genomic contig,...    29     348
ref|NT_024524.14|  Homo sapiens chromosome 13 genomic contig...    29     348
ref|NW_001838081.1|  Homo sapiens chromosome 13 genomic cont...    29     348
ref|NC_000013.10|  Homo sapiens chromosome 13, GRCh37.p2 pri...    29     348
ref|AC_000145.1|  Homo sapiens chromosome 13, alternate asse...    29     348
ref|AC_000056.1|  Homo sapiens chromosome 13, alternate asse...    29     348
gb|GL583190.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000501.1|  Homo sapiens chromosome 11, whole genome sho...    28     907
gb|DS990727.1|  Homo sapiens SCAF_1112675837066 genomic scaf...    28     907
gb|DS990792.1|  Homo sapiens SCAF_1112675837086 genomic scaf...    28     907
gb|CH003506.1|  Homo sapiens chromosome 11, whole genome sho...    28     907
gb|CH003458.1|  Homo sapiens chromosome 11, whole genome sho...    28     907
ref|NW_925106.1|  Homo sapiens chromosome 11 genomic contig,...    28     907
ref|NT_167190.1|  Homo sapiens chromosome 11 genomic contig,...    28     907
ref|NW_001838082.1|  Homo sapiens chromosome 13 genomic cont...    28     907
ref|NW_001838025.2|  Homo sapiens chromosome 11 genomic cont...    28     907
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    28     907
ref|AC_000143.1|  Homo sapiens chromosome 11, alternate asse...    28     907
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    28     907

1_0          1        tcgcagaaagaaaaatccaac 21
GL583019     14180919 ..a.................. 14180939
GL583019     6539927  ..c.................  6539946
CM000503     51785987 ..a.................. 51785967
CM000503     59438325 ..c.................  59438306
DS990692     15888003 ..a.................. 15887983
DS486054     15888640 ..a.................. 15888620
CH003508     55140356 ..a.................. 55140336
CH003508     63483036 ..c.................  63483017
CH003460     51744045 ..a.................. 51744025
CH003460     59393886 ..c.................  59393867
NW_925506    6676371  ..a.................. 6676351
NW_925506    14327765 ..c.................  14327746
NT_024524    52065109 ..a.................. 52065089
NT_024524    59720044 ..c.................  59720025
NW_001838081 10535982 ..a.................. 10535962
NC_000013    71085109 ..a.................. 71085089
NC_000013    78740044 ..c.................  78740025
AC_000145    51787226 ..a.................. 51787206
AC_000145    59439426 ..c.................  59439407
AC_000056    51987079 ..a.................. 51987059
AC_000056    59638473 ..c.................  59638454
GL583190     703128    ................a... 703147
CM000501     64771506  ................a... 64771525
DS990727     3356719  ..c.................  3356700
DS990792     630714    ................a... 630695
CH003506     67394667  ................a... 67394686
CH003458     66950922  ................a... 66950941
NW_925106    14120294  ................a... 14120313
NT_167190    13741471  ................a... 13741490
NW_001838082 3356627  ..c.................  3356608
NW_001838025 630757    ................a... 630738
NC_000011    68435676  ................a... 68435695
AC_000143    64772128  ................a... 64772147
AC_000054    65772218  ................a... 65772237

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 67,493,219
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 1000.0: 25
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)