BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2316
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583004.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|GL583049.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    29     348
gb|CM000502.1|  Homo sapiens chromosome 12, whole genome sho...    29     348
gb|DS990684.1|  Homo sapiens SCAF_1112675837353 genomic scaf...    29     348
gb|DS990694.1|  Homo sapiens SCAF_1112675837351 genomic scaf...    29     348
gb|DS486056.1|  Homo sapiens SCAF_1103279188406 genomic scaf...    29     348
gb|CH003507.1|  Homo sapiens chromosome 12, whole genome sho...    29     348
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    29     348
gb|CH003459.1|  Homo sapiens chromosome 12, whole genome sho...    29     348
ref|NW_001838929.1|  Homo sapiens chromosome 5 genomic conti...    29     348
ref|NW_925328.1|  Homo sapiens chromosome 12 genomic contig,...    29     348
ref|NW_922562.1|  Homo sapiens chromosome 5 genomic contig, ...    29     348
ref|NT_006576.16|  Homo sapiens chromosome 5 genomic contig,...    29     348
ref|NT_009714.17|  Homo sapiens chromosome 12 genomic contig...    29     348
ref|NW_001838052.1|  Homo sapiens chromosome 12 genomic cont...    29     348
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    29     348
ref|NC_000012.11|  Homo sapiens chromosome 12, GRCh37.p2 pri...    29     348
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    29     348
ref|AC_000144.1|  Homo sapiens chromosome 12, alternate asse...    29     348
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    29     348
ref|AC_000055.1|  Homo sapiens chromosome 12, alternate asse...    29     348
gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|GL582992.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL582997.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583242.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000499.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|CM000504.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|DS990668.1|  Homo sapiens SCAF_1112675837307 genomic scaf...    28     907
gb|DS990679.1|  Homo sapiens SCAF_1112675836899 genomic scaf...    28     907
gb|DS990702.1|  Homo sapiens SCAF_1112675837172 genomic scaf...    28     907
gb|DS990703.1|  Homo sapiens SCAF_1112675837104 genomic scaf...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003504.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003456.1|  Homo sapiens chromosome 9, whole genome shot...    28     907
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
emb|AL954800.2|  Human chromosome 14 complete sequence             28     907
ref|NW_001839221.1|  Homo sapiens chromosome 9 genomic conti...    28     907
ref|NW_001838859.2|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NW_921585.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NW_925539.1|  Homo sapiens chromosome 14 genomic contig,...    28     907
ref|NW_925395.1|  Homo sapiens chromosome 12 genomic contig,...    28     907
ref|NW_924484.1|  Homo sapiens chromosome 9 genomic contig, ...    28     907
ref|NT_008470.19|  Homo sapiens chromosome 9 genomic contig,...    28     907
ref|NT_022135.16|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NT_026437.12|  Homo sapiens chromosome 14 genomic contig...    28     907
ref|NT_029419.12|  Homo sapiens chromosome 12 genomic contig...    28     907
ref|NW_001838061.2|  Homo sapiens chromosome 12 genomic cont...    28     907
ref|NW_001838111.1|  Homo sapiens chromosome 14 genomic cont...    28     907
ref|NC_000009.11|  Homo sapiens chromosome 9, GRCh37.p2 prim...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|NC_000014.8|  Homo sapiens chromosome 14, GRCh37.p2 prim...    28     907
ref|AC_000141.1|  Homo sapiens chromosome 9, alternate assem...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    28     907
ref|AC_000052.1|  Homo sapiens chromosome 9, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    28     907
1_0          1         gtttattaacactgttttgaa 21
GL583004     19256245  ...........g......... 19256225
GL583049     2076329   ...........g......... 2076309
CM000495     24238279  ...........g......... 24238259
CM000502     11655867  ...........g......... 11655887
CM000502     88662498   ...c................ 88662517
DS990684     2295447   ...........g......... 2295467
DS990694     10209855  ...........g......... 10209835
DS486056     10209674  ...........g......... 10209654
CH003507     11197688  ...........g......... 11197708
CH003507     93218550   ...c................ 93218569
CH003452     24180046  ...........g......... 24180026
CH003459     15448565  ...........g......... 15448585
CH003459     89020733   ...c................ 89020752
NW_001838929 2877826   ...........g......... 2877806
NW_925328    2147300   ...........g......... 2147320
NW_922562    2721925   ...........g......... 2721905
NT_006576    24261016  ...........g......... 24260996
NT_009714    4650449   ...........g......... 4650469
NW_001838052 2295436   ...........g......... 2295456
NC_000005    24271016  ...........g......... 24270996
NC_000012    11890325  ...........g......... 11890345
NC_000012    91595281   ...c................ 91595300
AC_000137    24238757  ...........g......... 24238737
AC_000144    11655953  ...........g......... 11655973
AC_000144    88662753   ...c................ 88662772
AC_000048    24159166  ...........g......... 24159146
AC_000055    17032616  ...........g......... 17032636
AC_000055    91266439   ...c................ 91266458
CM000492     130245138  .........c.......... 130245119
GL582992     7485753    ...c................ 7485772
GL582997     5245976    .........c.......... 5245957
GL583242     615748     .........c.......... 615729
CM000499     57608719   .........c.......... 57608738
CM000504     27391735   ..g................. 27391754
DS990668     17777083   ...c................ 17777064
DS990679     6092632    ..g................. 6092651
DS990702     16780778   .........c.......... 16780797
DS990703     11444263   .........c.......... 11444282
CH003497     139932910  .........c.......... 139932891
CH003504     61647159   .........c.......... 61647178
CH003509     26994883   ..g................. 26994902
CH003449     129393504  .........c.......... 129393485
CH003456     55802772   .........c.......... 55802791
CH003461     27028227   ..g................. 27028246
AL954800     27193988   ..g................. 27194007
NW_001839221 16780993   .........c.......... 16781012
NW_001838859 11444340   .........c.......... 11444359
NW_921585    6157964    .........c.......... 6157945
NW_925539    27076618   ..g................. 27076637
NW_925395    38890268   ...c................ 38890287
NW_924484    16735953   .........c.......... 16735972
NT_008470    16949946   .........c.......... 16949965
NT_022135    28003302   .........c.......... 28003283
NT_026437    28273950   ..g................. 28273969
NT_029419    53738587   ...c................ 53738606
NW_001838061 17777115   ...c................ 17777096
NW_001838111 6092752    ..g................. 6092771
NC_000009    87785414   .........c.......... 87785433
NC_000002    138254639  .........c.......... 138254620
NC_000014    47273950   ..g................. 47273969
AC_000141    57609456   .........c.......... 57609475
AC_000134    130245016  .........c.......... 130244997
AC_000146    27391762   ..g................. 27391781
AC_000052    58355917   .........c.......... 58355936
AC_000045    131968161  .........c.......... 131968142
AC_000057    27134496   ..g................. 27134515
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 42,793,060
Number of extensions: 66
Number of successful extensions: 66
Number of sequences better than 1000.0: 60
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 66
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)