BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2322
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583048.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|CM000510.1|  Homo sapiens chromosome 20, whole genome sho...    29     348
gb|DS990841.1|  Homo sapiens SCAF_1112675831185 genomic scaf...    29     348
gb|CH003515.1|  Homo sapiens chromosome 20, whole genome sho...    29     348
gb|CH003467.1|  Homo sapiens chromosome 20, whole genome sho...    29     348
ref|NW_927339.1|  Homo sapiens chromosome 20 genomic contig,...    29     348
ref|NW_001838667.2|  Homo sapiens chromosome 20 genomic cont...    29     348
ref|NT_011362.10|  Homo sapiens chromosome 20 genomic contig...    29     348
ref|NC_000020.10|  Homo sapiens chromosome 20, GRCh37.p2 pri...    29     348
ref|AC_000152.1|  Homo sapiens chromosome 20, alternate asse...    29     348
ref|AC_000063.1|  Homo sapiens chromosome 20, alternate asse...    29     348

1_0          1        caaatcaaaacgaaccctgtc 21
GL583048     6359610  ...........a......... 6359590
CM000510     53585168 ...........a......... 53585148
DS990841     3154691  ...........a......... 3154711
CH003515     58861563 ...........a......... 58861543
CH003467     53468633 ...........a......... 53468613
NW_927339    27045981 ...........a......... 27045961
NW_001838667 3154713  ...........a......... 3154733
NT_011362    26998522 ...........a......... 26998502
NC_000020    56802430 ...........a......... 56802410
AC_000152    53585091 ...........a......... 53585071
AC_000063    53542872 ...........a......... 53542852

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,052,417
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)