BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi3002
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583077.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|DS990852.1| Homo sapiens SCAF_1112675837048 genomic scaf... 28 907
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 907
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 907
ref|NT_009755.19| Homo sapiens chromosome 12 genomic contig... 28 907
ref|NW_001838065.1| Homo sapiens chromosome 12 genomic cont... 28 907
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 907
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 907
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 907
1_0 2 tgcgatccagatttgttttg 21
GL583077 5272534 ..g................. 5272553
CM000502 126149155 ..g................. 126149174
DS990852 205695 ..g................. 205714
CH003459 126481437 ..g................. 126481456
NW_925395 76400561 ..g................. 76400580
NT_009755 6583356 ..g................. 6583375
NW_001838065 205674 ..g................. 205693
NC_000012 129163979 ..g................. 129163998
AC_000144 126149551 ..g................. 126149570
AC_000055 128776732 ..g................. 128776751
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 39,293,403
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)