BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi3003
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 29 422
gb|GL583017.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 29 422
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 29 422
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 29 422
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 29 422
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 29 422
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 29 422
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 29 422
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 29 422
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL582989.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583182.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000506.1| Homo sapiens chromosome 16, whole genome sho... 28 907
gb|DS990687.1| Homo sapiens SCAF_1112675837132 genomic scaf... 28 907
gb|DS990766.1| Homo sapiens SCAF_1112675837093 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003511.1| Homo sapiens chromosome 16, whole genome sho... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003463.1| Homo sapiens chromosome 16, whole genome sho... 28 907
ref|NW_926018.1| Homo sapiens chromosome 16 genomic contig,... 28 907
ref|NW_001838878.1| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838341.1| Homo sapiens chromosome 16 genomic cont... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NT_022459.15| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_010393.16| Homo sapiens chromosome 16 genomic contig... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000016.9| Homo sapiens chromosome 16, GRCh37.p2 prim... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000148.1| Homo sapiens chromosome 16, alternate asse... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000059.1| Homo sapiens chromosome 16, alternate asse... 28 907
1_0 1 ttgcaaaatgaggaattgaa 20
CM000494 175476497 ................... 175476479
GL583017 8338930 ................... 8338912
DS990657 39957826 ................... 39957808
CH003499 175948204 ................... 175948222
NW_001838921 39957587 ................... 39957569
NW_922217 59309199 ................... 59309181
NT_016354 104271342 ................... 104271324
NC_000004 179723621 ................... 179723603
AC_000136 175475348 ................... 175475330
AC_000047 177051720 ................... 177051702
CM000493 71050427 ...t................ 71050408
GL582989 4431639 ...t................ 4431658
GL583182 3114724 ..........t......... 3114705
CM000506 5908337 ..........t......... 5908356
DS990687 4782698 ...t................ 4782679
DS990766 3240087 ..........t......... 3240106
CH003498 80820438 ...t................ 80820419
CH003511 3314970 ..........t......... 3314989
CH003450 71141235 ...t................ 71141216
CH003463 5896548 ..........t......... 5896567
NW_926018 5869217 ..........t......... 5869236
NW_001838878 4782791 ...t................ 4782772
NW_001838341 3240064 ..........t......... 3240083
NW_921651 70978831 ...t................ 70978812
NT_022459 4781638 ...t................ 4781619
NT_010393 5883959 ..........t......... 5883978
NC_000003 71051908 ...t................ 71051889
NC_000016 5943959 ..........t......... 5943978
AC_000135 71050552 ...t................ 71050533
AC_000148 5908234 ..........t......... 5908253
AC_000046 70978831 ...t................ 70978812
AC_000059 6153567 ..........t......... 6153586
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 40,689,881
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 1000.0: 32
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 32
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)