BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi3007
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 29 348
gb|GL583045.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|DS990760.1| Homo sapiens SCAF_1112675837258 genomic scaf... 29 348
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 29 348
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 29 348
ref|NW_001838847.2| Homo sapiens chromosome 2 genomic conti... 29 348
ref|NW_921507.1| Homo sapiens chromosome 2 genomic contig, ... 29 348
ref|NT_022135.16| Homo sapiens chromosome 2 genomic contig,... 29 348
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 29 348
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 29 348
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 29 348
gb|GL582984.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583092.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583237.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583262.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CM000508.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|DS990662.1| Homo sapiens SCAF_1112675837338 genomic scaf... 28 907
gb|DS990677.1| Homo sapiens SCAF_1112675837177 genomic scaf... 28 907
gb|DS990688.1| Homo sapiens SCAF_1112675830807 genomic scaf... 28 907
gb|DS990804.1| Homo sapiens SCAF_1112675837369 genomic scaf... 28 907
gb|DS486024.1| Homo sapiens SCAF_1103279188393 genomic scaf... 28 907
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003465.1| Homo sapiens chromosome 18, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_926940.1| Homo sapiens chromosome 18 genomic contig,... 28 907
ref|NW_001838860.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_001838464.1| Homo sapiens chromosome 18 genomic cont... 28 907
ref|NW_921585.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NW_924584.1| Homo sapiens chromosome 10 genomic contig,... 28 907
ref|NW_925539.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_010859.14| Homo sapiens chromosome 18 genomic contig... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NT_008705.16| Homo sapiens chromosome 10 genomic contig... 28 907
ref|NW_001838110.1| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NW_001837931.2| Homo sapiens chromosome 10 genomic cont... 28 907
ref|NC_000018.9| Homo sapiens chromosome 18, GRCh37.p2 prim... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 28 907
ref|AC_000150.1| Homo sapiens chromosome 18, alternate asse... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 28 907
ref|AC_000061.1| Homo sapiens chromosome 18, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 28 907
1_0 1 aacctcaaagaaaaaccaaag 21
CM000492 112801683 .........c........... 112801663
CM000492 162028092 .....g.............. 162028111
GL583045 6118274 .........c........... 6118294
DS990760 671254 .........c........... 671274
CH003497 119584837 .........c........... 119584817
CH003497 22798472 ...............a.... 22798491
CH003497 172249085 .....g.............. 172249104
CH003449 112036909 .........c........... 112036889
CH003449 161147154 .....g.............. 161147173
NW_001838847 671262 .........c........... 671282
NW_921507 6076295 .........c........... 6076275
NT_022135 10225854 .........c........... 10225834
NC_000002 120477191 .........c........... 120477171
NC_000002 170136103 .....g.............. 170136122
AC_000134 112801571 .........c........... 112801551
AC_000134 162028254 .....g.............. 162028273
AC_000045 113802923 .........c........... 113802903
AC_000045 163756061 .....g.............. 163756080
GL582984 22828621 ....a............... 22828602
GL583092 7034360 ................a... 7034379
GL583237 166582 .....g.............. 166563
GL583262 1316057 .....a.............. 1316076
CM000500 15276836 ....a............... 15276855
CM000504 1237706 ................a... 1237687
CM000508 13516530 .....a.............. 13516549
DS990662 926514 ................a... 926495
DS990677 15505454 ....a............... 15505435
DS990688 20338592 .....g.............. 20338611
DS990804 2932837 .....a.............. 2932856
DS486024 926609 ................a... 926590
CH003505 15873026 ....a............... 15873045
CH003509 857712 ................a... 857693
CH003513 16333832 .....a.............. 16333851
CH003457 15627072 ....a............... 15627091
CH003461 913407 ................a... 913388
CH003465 13428115 .....a.............. 13428134
AL954800 1036987 ................a... 1036968
NW_926940 13444079 .....a.............. 13444098
NW_001838860 20338799 .....g.............. 20338818
NW_001838464 2932765 .....a.............. 2932784
NW_921585 37945864 .....g.............. 37945883
NW_924584 15297021 ....a............... 15297040
NW_925539 919852 ................a... 919833
NT_005403 20345521 .....g.............. 20345540
NT_010859 13551903 .....a.............. 13551922
NT_026437 2116859 ................a... 2116840
NT_008705 15303585 ....a............... 15303604
NW_001838110 926609 ................a... 926590
NW_001837931 15505092 ....a............... 15505073
NC_000018 13561903 .....a.............. 13561922
NC_000014 21116859 ................a... 21116840
NC_000010 15363585 ....a............... 15363604
AC_000150 13516104 .....a.............. 13516123
AC_000146 1237785 ................a... 1237766
AC_000142 15276885 ....a............... 15276904
AC_000061 13444079 .....a.............. 13444098
AC_000057 977730 ................a... 977711
AC_000053 15297021 ....a............... 15297040
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 64,006,498
Number of extensions: 58
Number of successful extensions: 58
Number of sequences better than 1000.0: 51
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)