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Singh, Prateek and Ujjainiya, Rajat and Prakash, Satyartha and Naushin, Salwa and Sardana, Viren and Bhatheja, Nitin and Singh, Ajay Pratap and Barman, Joydeb and Kumar, Kartik and Gayali, Saurabh and Khan, Raju and Rawat, Birendra Singh and Tallapaka, Karthik Bharadwaj and Anumalla, Mahesh and Lahiri, Amit and Kar, Susanta and Bhosale, Vivek and Srivastava, Mrigank and Mugale, Madhav Nilakanth and Pandey, C. P. and Khan, Shaziya and Katiyar, Shivani and Raj, Desh and Ishteyaque, Sharmeen and Khanka, Sonu and Rani, Ankita and Promila, . and Sharma, Jyotsna and Seth, Anuradha and Dutta, Mukul and Saurabh, Nishant and Veerapandian, Murugan and Venkatachalam, Ganesh and Bansal, Deepak and Gupta, Dinesh and Halami, Prakash M. and Peddha, Muthukumar Serva and Veeranna, Ravindra P. and Pal, Anirban and Singh, Ranvijay Kumar and Anandasadagopan, Suresh Kumar and Karuppanan, Parimala and Rahman, Syed Nasar and Selvakumar, Gopika and Venkatesan, Subramanian and Karmakar, Malay Kumar and Sardana, Harish Kumar and Kothari, Anamika and Parihar, Devendra Singh and Thakur, Anupma and Saifi, Anas and Gupta, Naman and Singh, Yogita and Reddu, Ritu and Gautam, Rizul and Mishra, Anuj and Mishra, Avinash and Gogeri, Iranna and Rayasam, Geethavani and Padwad, Yogendra and Patial, Vikram and Hallan, Vipin and Singh, Damanpreet and Tirpude, Narendra and Chakrabarti, Partha and Maity, Sujay Krishna and Ganguly, Dipyaman and Sistla, Ramakrishna and Balthu, Narender Kumar and Kumar, Kiran A. and Ranjith, Siva and Kumar, B. Vijay and Jamwal, Piyush Singh and Wali, Anshu and Ahmed, Sajad and Chouhan, Rekha and Gandhi, Sumit G. and Sharma, Nancy and Rai, Garima and Irshad, Faisal and Jamwal, Vijay Lakshmi and Paddar, Masroor Ahmad and Khan, Sameer Ullah and Malik, Fayaz and Ghosh, Debashish and Thakkar, Ghanshyam and Barik, S. K. and Tripathi, Prabhanshu and Satija, Yatendra Kumar and Mohanty, Sneha and Khan, Md Tauseef and Subudhi, Umakanta and Sen, Pradip and Kumar, Rashmi and Bhardwaj, Anshu and Gupta, Pawan and Sharma, Deepak and Tuli, Amit and Chaudhuri, Saumya Ray and Krishnamurthi, Srinivasan and Prakash, L. and Rao, Ch and Singh, B. N. and Chaurasiya, Arvindkumar and Chaurasiya, Meera and Bhadange, Mayuri and Likhitkar, Bhagyashree and Mohite, Sharada and Patil, Yogita and Kulkarni, Mahesh and Joshi, Rakesh and Pandya, Vaibhav and Mahajan, Sachin and Patil, Amita and Samson, Rachel and Vare, Tejas and Dharne, Mahesh and Giri, Ashok and Mahajan, Sachin and Paranjape, Shilpa and Sastry, G. Narahari and Kalita, Jatin and Phukan, Tridip and Manna, Prasenjit and Romi, Wahengbam and Bharali, Pankaj and Ozah, Dibyajyoti and Sahu, RaviKumar and Dutta, Prachurjya and Singh, Moirangthem Goutam and Gogoi, Gayatri and Tapadar, Yasmin Begam and Babu, Elapavalooru V. S. S. K. and Sukumaran, Rajeev K. and Nair, Aishwarya R. and Puthiyamadam, Anoop and Valappil, Prajeesh Kooloth and Prasannakumari, Adrash Velayudhan Pillai and Chodankar, Kalpana and Damare, Samir and Agrawal, Ved Varun and Chaudhary, Kumardeep and Agrawal, Anurag and Sengupta, Shantanu and Dash, Debasis (2022) A machine learning-based approach to determine infection status in recipients of BBV152 (Covaxin) whole-virion inactivated SARS-CoV-2 vaccine for serological surveys. COMPUTERS IN BIOLOGY AND MEDICINE, 146.
Nagpal, Gandharva and Chaudhary, Kumardeep and Agrawal, Piyush and Raghava, G.P.S. (2018) Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants. Journal of translational medicine, 16 (1). p. 181. ISSN 1479-5876
Agrawal, Piyush and Bhalla, Sherry and Chaudhary, Kumardeep and Kumar, Rajesh and Sharma, Meenu and Raghava, G.P.S. (2018) In silco Approach for Prediction of Antifungal Peptides. Frontiers in microbiology, 9. p. 323. ISSN 1664-302X
Nagpal, Gandharva and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2017) Computational Prediction of the Immunomodulatory Potential of RNA Sequences. Methods Molecular Biology, 1632. pp. 75-90. ISSN 1064-3745
Bhalla, Sherry and Chaudhary, Kumardeep and Kumar, Ritesh and Sehgal, Manika and Kaur, Harpreet and Sharma, Suresh and Raghava, G.P.S. (2017) Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer. Scientific Reports, 7. ISSN 2045-2322
Agrawal, Piyush and Bhalla, Sherry and Usmani, Salman Sadullah and Singh, Sandeep and Chaudhary, Kumardeep and Raghava, G.P.S. and Gautam, Ankur (2016) CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. Nucleic acids research, 44 (D1). D1098-103. ISSN 1362-4962
Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2016) SATPdb: a database of structurally annotated therapeutic peptides. Nucleic acids research, 44 (D1). D1119-26. ISSN 1362-4962
Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Gupta, Sudheer and Singh, Harinder and Raghava, G.P.S. (2016) Managing Drug Resistance in Cancer: Role of Cancer Informatics. Methods in molecular biology (Clifton, N.J.), 1395. pp. 299-312. ISSN 1940-6029
Chaudhary, Kumardeep and Nagpal, Gandharva and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2016) Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants. Scientific reports, 6. p. 20678. ISSN 2045-2322
Gupta, Sudheer and Chaudhary, Kumardeep and Kumar, Rahul and Gautam, Ankur and Nanda, Jagpreet Singh and Dhanda, Sandeep Kumar and Brahmachari, Samir Kumar and Raghava, G.P.S. (2016) Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine. Scientific reports, 6. p. 23857. ISSN 2045-2322
Chaudhary, Kumardeep and Kumar, Ritesh and Singh, Sandeep and Tuknait, Abhishek and Gautam, Ankur and Mathur, Deepika and Anand, Priya and Varshney, Grish C and Raghava, G.P.S. (2016) A Web Server and Mobile App for Computing Hemolytic Potency of Peptides. Scientific reports, 6. ISSN 2045-2322
Dhanda, Sandeep Kumar and Chaudhary, Kumardeep and Gupta, Sudheer and Brahmachari, Samir Kumar and Raghava, G.P.S. (2016) A web-based resource for designing therapeutics against Ebola Virus. Scientific reports, 6. p. 24782. ISSN 2045-2322
Kumar, Ravi and Chaudhary, Kumardeep and Sharma, Minakshi and Nagpal, Gandharva and Chauhan, Jagat Singh and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic acids research, 43 (Databa). D956-62. ISSN 1362-4962
Gautam, Ankur and Sharma, Minakshi and Vir, Pooja and Chaudhary, Kumardeep and Kapoor, Pallavi and Kumar, Rahul and Nath, Samir K and Raghava, G.P.S. (2015) Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides. European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft für Pharmazeutische Verfahrenstechnik e.V, 89. pp. 93-106. ISSN 1873-3441
Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Raghava, G.P.S. (2015) Computer-Aided Virtual Screening and Designing of Cell-Penetrating Peptides. Methods in molecular biology (Clifton, N.J.), 1324. pp. 59-69. ISSN 1940-6029
Singh, Sandeep and Singh, Harinder and Tuknait, Abhishek and Chaudhary, Kumardeep and Singh, Balvinder and Kumaran, S and Raghava, G.P.S. (2015) PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues. Biology direct, 10 (1). p. 73. ISSN 1745-6150
Gupta, Sudheer and Kapoor, Pallavi and Chaudhary, Kumardeep and Gautam, Ankur and Kumar, Rahul and Raghava, G.P.S. (2015) Peptide toxicity prediction. Methods in molecular biology (Clifton, N.J.), 1268. pp. 143-57. ISSN 1940-6029
Singh, Harinder and Kumar, Rahul and Singh, Sandeep and Chaudhary, Kumardeep and Gautam, Ankur and Raghava, G.P.S. (2015) Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines. BMC cancer, 16 (1). p. 77. ISSN 1471-2407
Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2015) SATPdb: a database of structurally annotated therapeutic peptides. Nucleic Acids Research, 44 (D1). D1119-D1126. ISSN 0305-1048
Nagpal, Gandharva and Gupta, Sudheer and Chaudhary, Kumardeep and Kumar Dhanda, Sandeep and Prakash, Satya and Raghava, G.P.S. (2015) VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants. Scientific Reports, 5. p. 12478. ISSN 2045-2322
Kumar, Ravi and Chaudhary, Kumardeep and Singh Chauhan, Jagat and Nagpal, Gandharva and Kumar, Rahul and Sharma, Minakshi and Raghava, G.P.S. (2015) An in silico platform for predicting, screening and designing of antihypertensive peptides. Scientific Reports, 5. p. 12512. ISSN 2045-2322
Kumar, Ravi and Chaudhary, Kumardeep and Sharma, Minakshi and Nagpal, Gandharva and Chauhan, Jagat Singh and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2014) AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic acids research, 43. D956-62. ISSN 1362-4962
Gautam, Ankur and Chaudhary, Kumardeep and Singh, Sandeep and Joshi, Anshika and Anand, Priya and Tuknait, Abhishek and Mathur, Deepika and Varshney, Grish C and Raghava, G.P.S. (2014) Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. Nucleic acids research, 42 (Databa). D444-9. ISSN 1362-4962
Kumar, Rahul and Chaudhary, Kumardeep and Singla, Deepak and Gautam, Ankur and Raghava, G.P.S. (2014) Designing of promiscuous inhibitors against pancreatic cancer cell lines. Scientific reports, 4. p. 4668. ISSN 2045-2322
Nagpal, Gandharva and Sharma, Minakshi and Kumar, Shailesh and Chaudhary, Kumardeep and Gupta, Sudheer and Gautam, Ankur and Raghava, G.P.S. (2014) PCMdb: pancreatic cancer methylation database. Scientific reports, 4. p. 4197. ISSN 2045-2322
Tyagi, Atul and Kapoor, Pallavi and Kumar, Rahul and Chaudhary, Kumardeep and Gautam, Ankur and Raghava, G.P.S. (2013) In silico models for designing and discovering novel anticancer peptides. Scientific reports, 3. p. 2984. ISSN 2045-2322
Gupta, Sudheer and Kapoor, Pallavi and Chaudhary, Kumardeep and Gautam, Ankur and Kumar, Rahul and Raghava, G.P.S. (2013) In silico approach for predicting toxicity of peptides and protein. PloS one, 8 (9). e73957. ISSN 1932-6203
Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Sharma, Arun and Kapoor, Pallavi and Tyagi, Atul and Raghava, G.P.S. (2013) In silico approaches for designing highly effective cell penetrating peptides. Journal of translational medicine, 11. p. 74. ISSN 1479-5876
Gautam, Ankur and Singh, Harinder and Tyagi, Atul and Chaudhary, Kumardeep and Kumar, Rahul and Kapoor, Pallavi and Raghava, G.P.S. (2012) CPPsite: a curated database of cell penetrating peptides. Database : the journal of biological databases and curation, 2012. bas015. ISSN 1758-0463
Kapoor, Pallavi and Singh, Harinder and Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Raghava, G.P.S. (2012) TumorHoPe: a database of tumor homing peptides. PloS one, 7 (4). e35187. ISSN 1932-6203
Chaudhary, Kumardeep (2015) Bioinformatics approaches for designing RNAi-based individualized therapy against cancer using high-throughput data. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.
