 | Up a level |
Singh, Deeksha and Pal, Shilpee and Subramanian, Srikrishna and Manickam, Natesan (2024) Comparative genomics of an extensively drug resistant strain Klebsiella pneumoniae IITR008 with international high-risk clonal lineage ST147 isolated from river water. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 117 (57).
Singh, Deeksha and Pal, Shilpee and Subramanian, Srikrishna and Manickam, Natesan (2024) Characterization and complete genome analysis of Klebsiella phage Kp109 with lytic activity against Klebsiella pneumoniae. VIRUS GENES, 60. pp. 222-234.
Akhtar, Akil and Lata, Madhu and Sunsunwal, Sonali and Yadav, Amit Kumar and Lnu, Kajal and Subramanian, Srikrishna and Ramya, T N C (2023) New carbohydrate binding domains identified by phage display based functional metagenomic screens of human gut microbiota. Nature communications, 6 (1). ISSN 2041-1723
Pal, Shilpee and Sharma, Gaurav and Subramanian, Srikrishna (2021) Complete genome sequence and identification of polyunsaturated fatty acid biosynthesis genes of the myxobacterium Minicystis rosea DSM 24000(T). BMC GENOMICS, 22 (1).
Kaur, Kamaldeep and Khatri, Indu and Akhtar, Akil and Subramanian, Srikrishna and Ramya, T N C (2020) Metagenomics analysis reveals features unique to Indian distal gut microbiota. PloS one, 15 (4). e0231197. ISSN 1932-6203
Khatri, Indu and Sharma, Gaurav and Subramanian, Srikrishna (2019) Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina, and insights into its probiotic properties. BMC microbiology, 19 (1). p. 307. ISSN 1471-2180
Verma, Ashish and Pal, Yash and Ojha, Anup Kumar and Kumari, Munesh and Khatri, Indu and Rameshkumar, N and Schumann, Peter and Dastager, Syed G and Mayilraj, Shanmugam and Subramanian, Srikrishna and Krishnamurthi, Srinivasan (2019) Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov. Systematic and applied microbiology, 42 (3). pp. 360-372. ISSN 1618-0984
Kaur, Gurmeet and Subramanian, Srikrishna (2018) Evolutionary relationship between the cysteine and histidine rich domains (CHORDs) and Btk-type zinc fingers. Bioinformatics. ISSN 1367-4803
Kaur, Gurmeet and Iyer, Lakshminarayan M and Subramanian, Srikrishna and Aravind, L (2018) Evolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes. Scientific reports, 8 (1). p. 6196. ISSN 2045-2322
Sharma, G. and Khatri, Indu and Subramanian, Srikrishna (2018) Comparative Genomics of Myxobacterial Chemosensory Systems. Journal of bacteriology, 200 (3). ISSN 1098-5530
Upadhyay, Udita and Srivastava, Suchita and Khatri, Indu and Nanda, Jagpreet Singh and Subramanian, Srikrishna and Arora, Amit and Singh, Jagmohan (2017) Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB. Molecular Biology of the Cell, 28 (8). pp. 1132-1146. ISSN 1059-1524
Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2017) Comparative Genomics of Myxobacterial Chemosensory Systems. Journal of Bacteriology, 200 (3). e00620-17. ISSN 0021-9193
Khatri, Indu and Tomar, Rajul and Ganesan, K. and Prasad, G. S. and Subramanian, Srikrishna (2017) Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii. Scientific Reports, 7. ISSN 2045-2322
Kaur, G. and Subramanian, Srikrishna (2017) Evolutionary analysis of a novel zinc ribbon in the N-terminal region of threonine synthase. Cell Cycle, 16 (20). pp. 1918-1926. ISSN 1538-4101
Verma, Ashish and Pal, Yash and Khatri, Indu and Ojha, Anup Kumar and Gruber-Vodicka, Harald and Schumann, Peter and Dastager, Syed and Subramanian, Srikrishna and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2017) Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius. Systematic and Applied Microbiology, 40 (7). pp. 411-422. ISSN 07232020
Ghosh, Suparna and Dureja, Chetna and Khatri, Indu and Subramanian, Srikrishna and Raychaudhuri, Saumya and Ghosh, Sagarmoy (2017) Identification of novel small RNAs in Burkholderia cenocepacia KC-01 expressed under iron limitation and oxidative stress conditions. Microbiology, 163 (12). pp. 1924-1936. ISSN 1350-0872
Sharma, G. and Subramanian, Srikrishna (2017) Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases. Genome Biology and Evolution, 9 (5). pp. 1304-1311. ISSN 1759-6653
Kaur, Gurmeet and Subramanian, Srikrishna (2016) Classification of the treble clef zinc finger: noteworthy lessons for structure and function evolution. Scientific reports, 6. p. 32070. ISSN 2045-2322
Sharma, Gaurav and Narwani, Tarun and Subramanian, Srikrishna (2016) Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus. PloS one, 11 (2). e0148593. ISSN 1932-6203
Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2016) Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. Genome biology and evolution, 8 (8). pp. 2520-9. ISSN 1759-6653
Khatri, Indu and Sharma, Shailza and Ramya, T N C and Subramanian, Srikrishna (2016) Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics. PloS one, 11 (6). e0156745. ISSN 1932-6203
Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) Evolutionary relationships between heme-binding ferredoxin α + β barrels. BMC bioinformatics, 17. p. 168. ISSN 1471-2105
Agrawal, Yamini and Narwani, Tarun and Subramanian, Srikrishna (2016) Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp. BMC genomics, 17. p. 367. ISSN 1471-2164
Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of Structural Biology, 196 (3). pp. 358-363. ISSN 10478477
Kaur, Gurmeet and Subramanian, Srikrishna (2015) The Ku-Mar zinc finger: A segment-swapped zinc ribbon in MarR-like transcription regulators related to the Ku bridge. Journal of structural biology, 191 (3). pp. 281-9. ISSN 1095-8657
Bishnoi, Ritika and Khatri, Indu and Subramanian, Srikrishna and Ramya, T N C (2015) Prevalence of the F-type lectin domain. Glycobiology, 25 (8). pp. 888-901. ISSN 1460-2423
Kaur, Gurmeet and Subramanian, Srikrishna (2015) The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon. Journal of structural biology, 190 (1). pp. 38-46. ISSN 1095-8657
Agrawal, Yamini and Khatri, Indu and Subramanian, Srikrishna and Shenoy,, Belle Damodara (2015) Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome biology and evolution, 7 (3). pp. 916-30. ISSN 1759-6653
Kaur, Gurmeet and Subramanian, Srikrishna (2015) The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers. Biology direct, 10. p. 36. ISSN 1745-6150
Kaur, Gurmeet and Subramanian, Srikrishna (2015) A novel RING finger in the C-terminal domain of the coatomer protein α-COP. Biology direct, 10 (1). p. 70. ISSN 1745-6150
Kaur, Gurmeet and Subramanian, Srikrishna (2014) Repurposing TRASH: emergence of the enzyme organomercurial lyase from a non-catalytic zinc finger scaffold. Journal of structural biology, 188 (1). pp. 16-21. ISSN 1095-8657
Singh, Nitin Kumar and Khatri, Indu and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Acinetobacter gerneri strain {MTCC} 9824T. Genomics Data , 2. 7 - 9.
Singh, Nitin Kumar and Khatri, Indu and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Acinetobacter guillouiae strain {MSP} 4-18. Genomics Data , 2. 1 - 3.
Singh, Nitin Kumar and Khatri, Indu and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Acinetobacter gyllenbergii strain {MTCC} 11365T. Genomics Data , 2. 4 - 6.
Khatri, Indu and Singh, Nitin Kumar and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Acinetobacter haemolyticus strain {MTCC} 9819T. Genomics Data , 2. 10 - 12.
Khatri, Indu and Singh, Nitin Kumar and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Acinetobacter junii strain {MTCC} 11364. Genomics Data , 2. 13 - 15.
Khatri, Indu and Subramanian, Srikrishna and Mayilraj, Shanmugam (2014) Genome sequencing and annotation of Amycolatopsis azurea {DSM} 43854T. Genomics Data , 2. 44 - 45.
Singh, Aditya and Vaidya, Bhumika and Khatri, Indu and Srinivas, T N R and Subramanian, Srikrishna and Korpole, Suresh and Pinnaka, Anil Kumar (2014) Grimontia indica AK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus. PloS one, 9 (1). e85590. ISSN 1932-6203
Khatri, Indu and Kaur, Sukhvir and Devi, Usha and Kumar, Navinder and Sharma, Deepak and Subramanian, Srikrishna and Saini, Adesh K (2013) Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium Pantoea sp. Strain AS-PWVM4. Genome announcements, 1 (6). e00947-13. ISSN 2169-8287
Devi, Usha and Khatri, Indu and Kumar, Navinder and Sharma, Deepak and Subramanian, Srikrishna and Saini, Adesh K (2013) Draft Genome Sequence of Plant-Growth-Promoting Rhizobacterium Serratia fonticola Strain AU-AP2C, Isolated from the Pea Rhizosphere. Genome announcements, 1 (6). ISSN 2169-8287
Khatri, Indu and Dureja, Chetna and Raychaudhuri, Saumya and Subramanian, Srikrishna (2013) Draft Genome Sequence of the Opportunistic Human Pathogen Morganella morganii SC01. Genome announcements, 1 (1). ISSN 2169-8287
Khatri, Indu and Mahajan, Sakshi and Dureja, Chetna and Subramanian, Srikrishna and Raychaudhuri, Saumya (2013) Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563. Gut Pathogens, 5 (1). p. 20. ISSN 1757-4749
Khatri, Indu and Akhtar, Akil and Kaur, Kamaldeep and Tomar, Rajul and Prasad, Gandham Satyanarayana and Ramya, Thirumalai Nallan Chakravarthy and Subramanian, Srikrishna (2013) Gleaning evolutionary insights from the genome sequence of a probiotic yeast Saccharomyces boulardii. Gut Pathogens, 5 (1). p. 30. ISSN 1757-4749
Khatri, Neelam and Khatri, Indu and Subramanian, Srikrishna and Raychaudhuri, Saumya (2012) Ethanolamine utilization in Vibrio alginolyticus. Biology direct, 7. 45; discussion 45. ISSN 1745-6150
Khatri, Indu and Nupur, Ms. and Korpole, Suresh and Subramanian, Srikrishna and Pinnaka, Anil Kumar (2012) Draft Genome Sequence of Rhodovulum sp. Strain PH10, a Phototrophic Alphaproteobacterium Isolated from a Soil Sample of Mangrove of Namkhana, India. Journal of bacteriology, 194 (22). p. 6363. ISSN 1098-5530
Vikram, Surendra and Kumar, Shailesh and Subramanian, Srikrishna and Raghava, G.P.S. (2012) Draft genome sequence of the nitrophenol-degrading actinomycete Rhodococcus imtechensis RKJ300. Journal of bacteriology, 194 (13). p. 3543. ISSN 1098-5530
Kumar, Shailesh and Vikram, Surendra and Subramanian, Srikrishna and Raghava, G.P.S. and Pinnaka, Anil Kumar (2012) Genome sequence of the halotolerant bacterium Imtechella halotolerans K1T. Journal of bacteriology, 194 (14). p. 3731. ISSN 1098-5530
Kumar, Shailesh and Subramanian, Srikrishna and Raghava, G.P.S. and Pinnaka, Anil Kumar (2012) Genome sequence of the marine bacterium Marinilabilia salmonicolor JCM 21150T. Journal of bacteriology, 194 (14). p. 3746. ISSN 1098-5530
