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Details of CancerPDF entry with Sequence CQGEPYHDIRFNLMAVVPDR
Primary information
sequence IDSeq_1048
Peptide sequenceCQGEPYHDIRFNLMAVVPDR
CancerPDF_ID CancerPDF_ID3406,
PMID24565027
Protein NameUbiquitin carboxyl-terminal hydrolase BAP1
UniprotKB Entry NameBAP1_HUMAN
FluidPlasma
Profiling TechniqueLinear ion-trap mass spectrometer (LTQ) coupled with a Surveyor HPLC-MS
Peptide Identification techniqueMS/MS
Labelled/Label FreeLabel Free
FDR0.05
CancerPDF_ID CancerPDF_ID3406,
p-Valueless than 0.05
SoftwareSEQUEST and OMSSA
Length20
Cancer TypeBreast cancer
DatabaseSASD (Synthetic Alternative Splicing Database)
ModificationNA
Number of Patients40 cancer patients for each training and testing set; 40 normal individuals for each training and testing set
RegulationDifferentially expressed between normal and patients
ValidationIndependent validation
SensitivityNA
SpecificityNA
AccuracyNA
Peptide AtlasNA
IEDBNA