Primary information |
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CancerPDF_ID | CancerPDF_ID3639 |
PMID | 27026199 |
Peptide Sequence | PGPAGARGnDGATGAAGPpGP |
Peptide Sequence in Publication | PGPAGARGnDGATGAAGPpGP |
Protein Name | Collagen alpha-1(I) chain |
UniprotKB Entry Name | CO1A1_HUMAN |
Biofluid | Urine |
M/Z | NA |
Charge | NA |
Mass/H+ | NA |
Mass (in Daltons) | 1760.82 |
Profiling Technique | "CE-MS, Micro-TOF-MS" |
Peptide Identification Technique | MS-MS |
Quantification Technique | NA |
Labeling | Label Free |
FDR | NA |
p-Value | less than 0.05 |
Software | Proteome Discoverer 1.2 |
Length of Peptide | 21 |
Cancer Type | Bladder cancer |
Database for Peptide search | Uniprot Human non-redundant Database |
Modification | p:Hydroxy-Proline; n:modified-Asparagine |
Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
Regulation/Differential Expression | Differentially expressed between recurrence of UBC vs recurrence control |
Validation | Independent Validation |
Sensitivity | For testing dataset 88% |
Specificity | For testing dataset 51% |
Accuracy | NA |
Secondary information |
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Peptide Atlas | NA |
IEDB | |