We have provided three different options to use our services (1) web-server, (2) standalone and (3) galaxy. In the web-server, user can run all web-services as a local host. A separate apache given in the OSDD-linux CD to launch these web-servers. The main advantage of providing these web-services through local host over standalone is that it includes graphical interface and user also can mirror our web-pages to provide service to others.
Following are the currently available web-servers in the OSDD-Linux:
| APSSP2 | Advanced Protein Secondary Structure Prediction Server |
| PROCLASS | Prediction of Protein Structure Classification |
| PSA | Analysis of Protein Sequence and Multiple Alignment |
| BetatPred2 | Prediction of betaturns in proteins |
| CHpredict | Prediction of CH..O and CH..Pi interactions |
| AR_NHPred | Prediction of aromatic backbone NH interaction in proteins |
| TBBPred | Prediction of Transmembrane Beta Barrel in Proteins |
| BetaTurns | Prediction of betaturn types in protein |
| BhairPred | Prediction of Beta Hairpins |
| GammaPred | Prediction of Gamma turns in protein |
| AlphaPred | Prediction of Alpha turns in protein |
| PepStr | 3D structure prediction of bioactive peptides |
| SarPred | A neural network based method predicts the real value of surface acessibility (SA) by using multiple sequence alignment |
| FiSipred | Prediction of backbone torsion angles phi and psi |
| PROPRED1 | prediction of promiscuous MHC Class-I binding sites |
| nHLA4pred | A neural network based MHC Class-I Binding Peptide Prediction Server |
| MMBpred | Prediction of mutated high affinity and promiscuous MHC class-I binding peptides from protein sequence |
| Pcleavage | An SVM based method for proteosome cleavage prediction |
| TAPpred | TAPPred is a tool for predicting binding affinity of peptides toward the TAP transporter |
| CTLpred | CTLpred: Prediction of cytotoxic T cell epitopes |
| PROPRED | Prediction of HLA-DR binding sites |
| HLADR4pred | SVM based method for predicting HLA-DRB1 binding peptides in an antigen sequence |
| CBtope | Conformational B-cell epitope prediction |
| LBtope | Prediction of linear B-cell epitopes |
| MHC2pred | SVM based method for prediction of promiscuous MHC class II binding peptides |
| MHC | Matrix Optimization Technique for Predicting MHC binding Core |
| MHCbench | Evaluation of Major Histocompatibility Complex (MHC) binding peptide prediction algorithms |
| BCEpred | Bcepred: Prediction of linear B-cell epitopes, using physico-chemical properties |
| ABCpred | Prediction of B-cell epitopes in antigen sequence |
| HLApred | |
| HLA_affi | |
| FDR4 | Prediction of binding affinity of peptide binders in an antigenic sequence for a MHC class II allele HLA-DRB1*0401 |
| Tmhcpred | Prediction of MHC Class I and II binding peptides |
| IFNepitope | A server for predicting and designing interferon-gamma inducing epitopes |
| IL4pred | A tool to predict interleukin-4 inducing epitopes |
| AbAg | |
| NRpred | NRpred: A server for classification of nuclear receptors |
| GPCRpred | GPCRpred: Prediction of families and subfamilies of G-protein coupled receptors |
| GPCRsclass | GPCRsclass: classification of amine type of G-protein-coupled receptors |
| ESLpred | ESLpred: SVM Based Method for Subcellular Localization of Eukaryotic Proteins |
| PSLpred | PSLpred: prediction of subcellular localization of bacterial proteins |
| BTXpred | BTXpred Server: Prediction of Bacterial Toxins |
| Mitpred | Prediction of mitochondrial proteins using support vector machine and hidden Markov model |
| SRTpred | SVM-based method for the classification of protein sequence as secretory or non-secretory protein |
| Oxypred | Prediction of the oxygen-binding proteins |
| VGIchan | Voltage gated ion channel prediction server |
| HSLpred | HSLpred: A server for the prediction of the subcellular localization of human protein |
| GSTpred | Prediciton of Glutathione S-transferase protein |
| NTXpred | Prediction of Neurotoxins and its source and probable function from primary amino acid sequence |
| VICMpred | Prediction of Virulence factors, Information molecule, Cellular process and Metabolism molecule in the Bacterial proteins |
| ALGpred | Prediction of allergenic proteins and mapping of IgE epitopes |
| PseaPred | Prediction of proteins secreted by malarial parasite P.falciparum into infected-erythrocyte |
| RSL-Pred | A SVM based method for subcellular localization prediction of rice proteins |
| ESLPred2 | ESLpred2 is an improved version of ESLpred, for predicting eukaryotic sub cellular localization |
| ChemoPred | A tool to predict chemokine and their receptor |
| PFMpred | Predicting mitochondrial proteins of P.falciparum |
| TBPred | Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs |
| ProPrint | Prediction of physical or functional interactions between protein molecules |
| ISSpred | Intein Splice Site Prediction |
| Mango | Prediction of Protein Function from Manually Annotated proteins based on GO (Gene Ontology) |
| Cancer_Pred | A method for the prediction of Cancer lectins |
| LGEpred | Correlation Analysis and Prediction of Genes Expression from Amino Acid Sequence of Proteins |
| DNAsize | Computation of size of DNA and Protein Fragments from Their Electrophoretic Mobility |
| CyclinPred | A SVM based prediction method to identify novel cyclins |
| CytoPred | |
| PseaPred2 | Prediction of plasmodium secretory and infected erythrocyte associated proteins |
| ChloroPred | A web based tool for prediction of chloroplast proteins |
| COPid | Composition Based Protein Identification |
| SubMitpred | Prediction of Submitochondrial Location of mitochondrial Proteins |
| SPred | |
| AC2Dgel | |
| plPred | |
| ATPint | Prediction of ATP interacting protein residues |
| ADPint | Prediction of ADP interacting protein residues |
| FADpred | A webserver for the prediction of FAD interacting residues |
| GTPbinder | Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information |
| NADbinder | Prediction of NAD interacting residues in proteins |
| PreMieR | A webserver for the prediction of Mannose Interacting residue |
| Pprint | A tool for predicting RNA-binding residues of a protein |
| eanalogs | |
| ntegfr | |
| GlycoPP | A webserver for predicting potential N-and O-glycosites in prokaryotic protein sequence(s) |
| GlycoEP | In silico platform for prediction of N-, O- and C-Glycosites in eukaryotic protein sequences |
| tRNAmod | Prediction of transfer RNA (tRNA) modifications |
| VitaPred | Prediction method for the vitamin-interacting residues in protein sequences |
| RNApin | Support Vector Machines (SVMs) based web-server for the prediction of Protein Interacting Nucleotides (PINs) in RNA sequences |
| RNAint | A tool for the prediction of RNA interacting mono-residues (RIMRs), di-residues (RIDRs), tri-residues (RITRs), tetra-residues (RITTRs) and penta-residues (RIPRs) from protein sequences |
| DNAint | Prediction of DNA interacting residues (DIRs) from protein sequences |
| DOMprint | Domain-domain interaction prediction server |
| MYCOprint | Mycobacterial protein-protein interaction predictor |
| CellPPD | CellPPD predicts the cell penetration efficiency of the peptides |
| TumorHPD | TumorHPD predicts the tumor homing property of the peptides |
| AntiCP | AntiCP predicts the anticancer activity of the peptides |
| Toxinpred | ToxinPred predicts the toxicity of the peptides |
| desiRm | Designing of Highly Effective Complementary and Mismatch siRNAs for Silencing a Gene |
| AntiBP | AntiBP: A server for the prediction of the antibacterial peptides |
| AntiBP2 | AntiBP2: A server for the prediction of the antibacterial peptides |
| Destamp | |
| Drug Designing | |
| DrugMint | A method developed for predicting drug-likelihood of a compound |
| KiDoQ | Designing of inhibitors against Dihydrodipicolinate synthase (DHDPS) |
| GDoQ | Prediction of GLMU inhibitors using QSAR and AutoDock |
| DMKpred | DMKPred is a SVM based tool for the prediction of binding of chemical molecules with specific kinases |
| MetaPred | Prediction of Cytochrome P450 isoform responsible for metabolizing a drug molecule |
| WebCDK | Web-interface for CDK libraries |
| Desc_cal | |
| TOXIpred | A server for prediction of aqueous toxicity of small chemical molecules in T. pyriformis |
| ABMPred | Prediction of AntiBacterial Compounds against MurA Enzyme |
| MDRIpred | |
| KetoDrug | A web server for binding affinity prediction of ketoxazole derivatives against Fatty Acid Amide Hydrolase (FAAH) |
| TLR4HI | Prediction of inhibitors against human TLR4 |
