This module allow users to perform structure based similarity against CPPsite 2.0. User may submit tertiary structure of their peptide to search cell penetrating peptides having similar structure. The page can accept the input in major file formats (PDB, Smiles). In addition user may select desired search options (searching is performed using JCsearch). The PDB format is set as default format.
SMILES search page of CPPsite 2.0
This page provides facility to search SMILES notation of a given peptide against various peptide database in CPPsite 2.0. For more information see HELP page.
PDB search Page
This module had been designed with the aim to provide virtual screening facility to scientific community. Using this tool, users can screen their peptide library and identify similar or exact peptides from various databases. The input for this module could be provided by 1) pasting the peptide structure in defined text area OR 2) Upload the structure file in standard PDB format. For more information click HELP