Benchmarking of Assembler
This is a major module of GenomeABC which allows users to evaluate their assemblers. In order to use this module user should provide reference genome and contigs generated by their assemblers. This module will compare contigs and reference genome in order to evaluate performance of assemblers. In this study, BLAT is used to map contigs on reference genome.
The contigs and reference genome should be submitted in fasta format (See example files fo contigs
and reference genome
). This server will generate output in specific format (See example output file)
, description of output is given help file