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HIV Targets (Escape Sequence)  Click Here -->  See Targets with mismatches siRNA ID siRNA Sequence Escape Target Nucleotide Length Nt no. (Del/Subs) Status (Ins / Del / Subs) Day Efficacy PubMed 1551 GGGACUGGAAGGGCUAAUU GGGAUUGGAAGGGUUAGUU 19 1 Subs 2 64 19672247 1552 ACAGGAGCAGAUGAUACAG ACUGGAGUAGAUGAUGCAG 19 3 Subs 2 89 19672247 1521 AUGGCAGGAAGAAGCGGAG GUGGUAGGAAGAGGCGGAG 19 3 Subs 2 89 19672247 1551 GGGACUGGAAGGGCUAAUU GGGAUUGGAAGGGUUAGUU 19 3 Subs 2 43 19672247 1521 AUGGCAGGAAGAAGCGGAG GUGGUAGGAAGAGGCGGAG 19 3 Subs 2 91 19672247 1551 GGGACUGGAAGGGCUAAUU GGGAUUGGAAGGGUUAGUU 19 2 Subs 2 43 19672247 1522 ACAGGAGCAGAUGAUACAG ACGGGAGUAGAUGAUGCAG 19 3 Subs 2 51 19672247 1521 AUGGCAGGAAGAAGCGGAG GUGGUAGGAAGAGGCGGAG 19 2 Subs 2 76 19672247 1523 GAAGAAAUGAUGACAGCAU GAAGGAAUGAUGAUAGUAU 19 2 Subs 2 76 19672247 1551 GGGACUGGAAGGGCUAAUU GGGAUUGGAAGGGUUAGUU 19 2 Subs 2 72 19672247 1522 ACAGGAGCAGAUGAUACAG ACGGGAGUAGAUGAUGCAG 19 3 Subs 2 0 19672247 1522 ACAGGAGCAGAUGAUACAG ACGGGAGUAGAUGAUGCAG 19 2 Subs 2 78 19672247 1521 AUGGCAGGAAGAAGCGGAG GUGGUAGGAAGAGGCGGAG 19 3 Subs 2 90 19672247 1523 GAAGAAAUGAUGACAGCAU GAAGGAAUGAUGAUAGUAU 19 2 Subs 2 92 19672247 1031 CUGCUUGUACCAAUUGCUA CUGCUUGUUCAAUUGCUA 21 1 Subs 25 69 14557638 1676 GAUUGUACUGAGAGACAGGCU GAUUGUACUGAAAGACAGGCU 21 1 Subs 28 log 17805304 1677 AGACAAGCACAUUGUAACA AGACAAGCCCCUUGUAACA 19 2 Subs 43 High log 20833635 1677 AGACAAGCACAUUGUAACA AGACAAGCAUAUUGUAACA 19 1 Subs 43 log 20833635 1181 GUGAAGGGGCAGUAGUAAU GUGAAGGGACAGUAGUAAU 21 1 Subs 27 10 16959541 1237 UAGUGUGUGCCCGUCUGUUGU UAGUAUGUGCCCGUCUGUUGU 21 1 Subs 2 49 17996047 1237 UAGUGUGUGCCCGUCUGUUGU CAGUGUGUGCCCGUCUGUUGU 21 1 Subs 2 37 17996047 1237 UAGUGUGUGCCCGUCUGUUGU UGGUGUGUGCCCGUCUGUGUU 21 3 Subs 2 77 17996047 1240 CGCAGGACUCGGCUUGCUGAA CGCAGGACUCGGCUUGCUGAG 21 1 Subs 2 77 17996047 1244 UAGAAGAAAUGAUGACAGCAU UAGAAGAGAUGAUGACAGCAU 21 1 Subs 2 86 17996047 1249 GACCUACACCUGUCAACAUAA GACCCACACCUAUCAACAUAA 21 2 Subs 2 51 17996047 1238 GUGACUCUGGUAACUAGAGAU GUGACUCUGGUAGCUAGAGAU 21 1 Subs 2 36 17996047 1238 GUGACUCUGGUAACUAGAGAU AGGACUCUGGUAACUAGAGAU 21 2 Subs 2 96 17996047 1250 ACCUACACCUGUCAACAUAAU ACCCACACCUAUCAACAUAAU 21 2 Subs 2 40 17996047 1255 UGGAGGAAAUGAACAAGUAGA UGGAGGGAAUGAACAAAUAGA 21 2 Subs 2 0 17996047 1258 UCCCUACAAUCCCCAAAGUCA CCCCUACAAUCCCCAAAGUCA 21 1 Subs 2 93 17996047 1263 GGGGGGAUUGGGGGGUACAGU GGGGGGAUUGGGGACUACUGU 21 3 Subs 2 9 17996047 1264 GGGUACAGUGCAGGGGAAAGA GACUACUGUGCAGGGGAAAGA 21 3 Subs 2 83 17996047 1265 UACAGUGCAGGGGAAAGAAUA UACUGUGCAGGGGAAAGAAUA 21 1 Subs 2 99.7 17996047 1519 GUGAAGGGGCAGUAGUAAU GUGAAGGAGCAGUAGUAAU 19 1 Subs 2 66 19656954 1519 GUGAAGGGGCAGUAGUAAU GUGAAGGGGCAGUAAUAAU 19 1 Subs 2 58 19656954 1519 GUGAAGGGGCAGUAGUAAU GUGAAGGAGCAGUAAUAAU 19 2 Subs 2 43 19656954 1520 AUGGCAGGAAGAAGCGGAG AUGGCCGGAAGAAGCGGAG 19 1 Subs 2 4 19656954 1520 AUGGCAGGAAGAAGCGGAG AUGGCAGGAAAAAGCGGAG 19 1 Subs 2 21 19656954 1520 AUGGCAGGAAGAAGCGGAG AUGGCAGAAAAAAGCGGAG 19 2 Subs 2 14 19656954 1520 AUGGCAGGAAGAGGAGGAG AUGGCAGAAAAAAGCGGAG 19 1 Subs 2 42 19656954 1676 GAUUGUACUGAGAGACAGGCU GAUUGUACAGAGAGACAGGCU 21 1 Subs 28 log 17805304 1676 GAUUGUACUGAGAGACAGGCU GAUUGUAUUGAGAGACAGGCU 21 1 Subs 28 log 17805304 1668 GGCUUGCUGAAGCGCGCACGG GGCUUGCUGAUGCGCGCACGG 21 1 Subs 77 0 19556221 1668 GGCUUGCUGAAGCGCGCACGG GGCUUGCUGAUGCGCGCACGG 21 1 Subs 84 0 19556221 1668 GGCUUGCUGAAGCGCGCACGG GGCUUGCUGAUGCGCGCACGG 21 1 Subs 91 0 19556221 1668 GGCUUGCUGAAGCGCGCACGG GGCUUGCUGAUGCGCGCACGG 21 1 Subs 98 0 19556221 1607 GCGGAGACAGCGACGAAGAGC GCGGAGACAGCGACGAAGCGC 23 1 Subs 0 0 18596982 1608 GCCUGUGCCUCUUCAGCUACC ACCUGUGCCUCUUCAGCUACC 23 1 Subs 0 0 18596982 1609 GUUCAGAAGUACACAUCCCAC GUUCAGAAGUACAUAUUCCAU 23 3 Subs 0 22 18596982 1106 GUGCCUGGCUAGAAGCACA  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  19 19 Del 3 0 16708080 1106 GUGCCUGGCUAGAAGCACA GUACCUGGCGAGAAGCACA 19 2 Subs 3 28 16708080 1071 GUGCCUGGCUAGAAGCACA  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  19 19 Del 43 log 15687388 1071 GUGCCUGGCUAGAAGCACA GU _  _  _  _  _  _  _  _  _  _  _ AGCACA 19 11 Del 46 log 15687388 1071 GUGCCUGGCUAGAAGCACA GUGCCUGGCGAGAAGCACA 19 1 Subs 27 log 15687388 1071 GUGCCUGGCUAGAAGCACA GUACCUGGCGAGAAGCACA 19 2 Subs 62 log 15687388 1071 GUGCCUGGCUAGAAGCACA  _  _  _  _  _ UGGCUAGAAGCACA 19 5 Del 62 log 15687388 1071 GUGCCUGGCUAGAAGCACA GUGCCUGGCUAGAAG _  _  _  _  19 4 Del 62 log 15687388 1071 GUGCCUGGCUAGAAGCACA GUGCCUGGCUAGAGGCACA 19 1 Subs 80 log 15687388 1071 GUGCCUGGCUAGAAGCACA  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  19 19 Del 77 log 15687388 1071 ACUGCUUGUGCCUGGCUAGAAGCACA ACUGCUUGUGCCUGGCUAGAAGCACA 26 1 Subs 74 log 15687388 1071 GUGCCUGGCUAGAAGCACA GUGCCUGGAUAGAAGCACA 19 1 Subs 61 log 15687388 1597 GUGCCUGGCUAGAAGCACA  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  19 19 Del 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA GU _  _  _  _  _  _  _  _  _  _  _ AGCACA 19 11 Del 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA GUGCCUGGCGAGAAGCACA 19 1 Subs 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA GUACCUGGCGAGAAGCACA 19 1 Subs 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA  _  _  _  _  _ UGGCUAGAAGCACA 19 5 Del 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA GUGCCUGGCUAGAAG _  _  _  _  19 4 Del 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA GUGCCUGGCUAGAGGCACA 19 1 Subs 43 log 14963165 1597 GUGCCUGGCUAGAAGCACA  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  _  19 19 Del 43 log 14963165 1564 GUGAAGGGGCAGUAGUAAU GUGAAGGAGCAGUAGUAAU 19 1 Subs 75 log 18180777 1564 GUGAAGGGGCAGUAGUAAU GUGAAGGGGCAGUAAUAAU 19 1 Subs 75 log 18180777 1564 GUGAAGGGGCAGUAGUAAU GUGAAGGGGCAGUAAUAAU 19 1 Subs 75 log 18180777 1564 GUGAAGGGGCAGUAGUAAU GUGAAGGGACAGUAGUAAU 19 1 Subs 75 log 18180777 1564 GUGAAGGGGCAGUAGUAAU GUGAAGGGGCAUUAGUAAU 19 1 Subs 75 log 18180777 1669 CAGAUGGCAGGUGAUGAUUGU CACAUGGCAGGUGAUGAUUGU 21 1 Subs 21 0 19556221 1669 CAGAUGGCAGGUGAUGAUUGU CACAU_GCAGGUGAUGAUUGU 21 1+1 Subs/Del 28 0 19556221 1669 CAGAUGGCAGGUGAUGAUUGU UACAA_GCAGCUGAUGAUCUU 21 6+1 Subs/Del 35 0 19556221 1669 CAGAUGGCAGGUGAUGAUUGU GAUUAAU_AGCUGAUGACUGU 21 8+1 Subs/Del 42 0 19556221 1669 CAGAUGGCAGGUGAUGAUUGU CAUUUGG_AGC_ _UAUAUGUG 21 10+3 Subs/Del 49 0 19556221 1660 CAUGUGGCAGGAAGUAGGA CAUGUGGCACGAACUAGGA 19 1 Subs 3 91 17176628 1671 GUGAAGGGGCAGUAGUAAU GUGAAGGAGCAGUAGUAAU 19 1 Subs 7 65 20529316 1671 GUGAAGGGGCAGUAGUAAU GUGAAGGGGCAGUAAUAAU 19 1 Subs 7 62 20529316 1604 ACAGGAGCAGAUGAUACAG ACAGGA _ CAGAUGAUACAG 19 1 Del 2 59 17715143 1604 ACAGGAGCAGAUGAUACAG ACAG _ AGCAGAUGA _ ACAG 19 2 Del 2 59 17715143 1604 ACAGGAGCAGAUGAUACAG ACAGGAG _  _ GAUGAUACAG 19 2 Del 2 23 17715143 1181 GUGAAGGGGCAGUAGUAAU GUGAAGGGACAGUAGUAAU 19 1 Subs 2 80 16959541 1675 CUGCCUGGCUAGAAGCACA CUACCUGGCGAGAAGCACA 19 2 Subs 7 39 18668146 1107 CUGCUUGUACCAAUUGCUA CUGCUUGUUCCAAUUGCUA 19 1 Subs 12 85 16840344 1107 CUGCUUGUACCAAUUGCUA CUGCUUGUCCCAAUUGCUA 19 1 Subs 12 5 16840344 1108 GGAGAGCAAUGGCUAGUGA GGAAAGCAAUGGCUAGUGA 19 1 Subs 12 90 16840344 1108 GGAGAGCAAUGGCUAGUGA GGAGAGCAUUGGCUAGUGA 19 1 Subs 12 90 16840344 1108 GGAGAGCAAUGGCUAGUGA GGAGAGCAGUGGCUAGUGA 19 1 Subs 12 78 16840344 1107 CUGCUUGUACCAAUUGCUA CUGCUUGUACCAACUGCUA 19 1 Subs 16 10 16840344 1109 GACUGGAAGGGCUAAUUCA GACUGGAAGGGCUAGUUCA 19 1 Subs 16 45 16840344 1109 GACUGGAAGGGCUAAUUCA GACUGGAAGGGCUAAUUUA 19 1 Subs 16 20 16840344 1108 GGAGAGCAAUGGCUAGUGA GGAAAGCAAUGGCUAGUGA 19 1 Subs 22 85 16840344 1108 GGAGAGCAAUGGCUAGUGA GGAGAGCAUUGGCUAGUGA 19 1 Subs 22 50 16840344 1108 GGAGAGCAAUGGCUAGUGA GGAGAGCAAUAGCUAGUGA 19 1 Subs 22 90 16840344 1109 GACUGGAAGGGCUAAUUCA GACUAGAAGGGCUAAUUCA 19 1 Subs 22 68 16840344 1109 GACUGGAAGGGCUAAUUCA GACUGGAAGGACUAAUUCA 19 1 Subs 22 25 16840344 1109 GACUGGAAGGGCUAAUUCA GACUGGAAGGGCUAAUUUA 19 1 Subs 22 10 16840344 1672 UAUCAAUACAUGGAUGAUUUGUAU UAUCAAUACAUGGAUGAUUUGUAU 24 1 Subs 4 10 16290277 1672 UAUCAAUACAUGGAUGAUUUGUAU UAUCAAUACAUAGAUGAUUUGUAU 24 1 Subs 4 54 16290277 1673 UAUCAAUACGUGGAUGAUUUGUAU UAUCAAUACGUGGAUGAUUUGUAU 24 1 Subs 4 67 16290277 1673 UAUCAAUACGUGGAUGAUUUGUAU UAUCAAUACAUAGAUGAUUUGUAU 24 1 Subs 4 17 16290277 1674 UAUCAAUACAUAGAUGAUUUGUAU UAUCAAUACAUGGAUGAUUUGUAU 24 1 Subs 4 0 16290277 1674 UAUCAAUACAUAGAUGAUUUGUAU UAUCAAUACGUGGAUGAUUUGUAU 24 1 Subs 4 62 16290277 HIV Targets (Mismatches)  [Top] Mutation ID siRNA ID Mutation Sequence Mutation Efficacy Mutation Number MTt1 1036 GUUACUGAGAGACAGGCUAAUU 50 fold G1U 1 MTt2 1036 GCACUGAGAGACAGGCUAAUU 42 fold U2C 1 MTt3 1036 GUCCUGAGAGACAGGCUAAUU 10 fold A3C 1 MTt4 1036 GUAAUGAGAGACAGGCUAAUU 2 fold C4A 1 MTt5 1036 GUACCGAGAGACAGGCUAAUU 32 fold U5C 1 MTt6 1036 GUACUAAGAGACAGGCUAAUU 15 fold G6A 1 MTt7 1036 GUACUGCGAGACAGGCUAAUU 10 fold A7C 1 MTt8 1036 GUACUGAAAGACAGGCUAAUU 10 fold G8A 1 MTt9 1036 GUACUGAGCGACAGGCUAAUU 2 fold A9C 1 MTt10 1036 GUACUGAGAUACAGGCUAAUU 2 fold G10U 1 MTt11 1036 GUACUGAGAGCCAGGCUAAUU 10 fold A11C 1 MTt12 1036 GUACUGAGAGAUAGGCUAAUU 54 fold C12U 1 MTt13 1036 GUACUGAGAGACCGGCUAAUU 35 fold A13C 1 MTt14 1036 GUACUGAGAGACAAGCUAAUU 45 fold G14A 1 MTt15 1036 GUACUGAGAGACAGACUAAUU 30 fold G15A 1 MTt16 1036 GUACUGAGAGACAGGAUAAUU 8 fold C16A 1 MTt17 1036 GUACUGAGAGACAGGCCAAUU 7 fold U17C 1 MTt18 1036 GUACUGAGAGACAGGCUCAUU 5 fold A18C 1 MTt19 1036 GUACUGAGAGACAGGCUACUU 230 fold A19C 1 MTt20 1036 GUACUGAGAGACAGGCUAACU 130 fold U20C 1 MTt21 1036 GUACUGAGAGACAGGCUAAUC 110 fold U21C 1 MTt22 1585 GAAUGUACUGAAAGACAGG 92 U3A/G12A 2 MTt23 1585 GACUGCACUGAAAGGCAGG 90 U3C/U6C/G12A/A15G 4 MTt24 1585 GACUGCACUGAAAGGCAGG 90 U3C/G12A/A15G 3 MTt25 1585 GAUUGUACUGAAAGACAGG 76 G12A 1 MTt26 1585 GACUGCACUGAAAGACAGG 99 U3C/U6C/G12A 3 MTt27 1585 GACUGCACUGAAAGACAGG 50 U3C/U6C/ 2 MTt28 1585 GUUCAGAAGUACACAUACC 15 C17A 1 MTt29 1575 GUUCAGAAGUACAUAUCCC 33 C14U 1 MTt30 1575 GCUCAGAAGUACAUAUCCC 13 U2C/C14U 2 MTt31 1580 GACUGCACUGAAAGACAGG 92 U3C/U6C/G12A 3 MTt32 1580 GACUGUACUGAGAGGCAGG 9 U3C/A15G 2 MTt33 1580 GAUUGCACUGAAAGACAGG 92 U6C/G12A 2 MTt34 1580 GACUGCACUGAGAGACAGG 92 U3C/U6C/ 2 MTt35 1580 GAUUGCACUGAGAGACAGG 35 U6C 1 MTt36 1580 GAUUGUACUGAAAGACAGG 68 G12A 1 MTt37 1575 GUUCAGAAGUACACAUACC 21 C17A 1 MTt38 1575 GUUCAGAAGUACAUAUCCC 26 C14A 1 mTt39 1237 UAGUAUGUGCCCGUCUGUUGU 49 G5A 1 mTt40 1237 CAGUGUGUGCCCGUCAUUGU 37 C1A/G17A 2 mTt41 1375 AGAAGGCUGCAAACAAAUA 90 A7C/U9C/C10A 3 mTt42 1542 AAGUUCAUAAUGUCUGGGCUA 85 5AU 1 mTt43 1542 AAGUACACAAUGUCUGGGCUA 83 U8C 1 mTt44 1661 ACCCCUGGUCGGGCGCAA 8 G1A/U2C/U8G 3 mTt45 1662 UUGCGCCCGACCAGGGGU 0 G2U/A11C/A17G/C18U 4 mTt46 1539 UAAAGAAAUUAGCAAUUACAC 90 A2G/U4C/G12A 3 mTt47 1666 CUACCUGGCGAGAAGCACA 40 G3A/U10G 2 mTt48 1672 UAUCAAUACAUAGAUGAUUUGUAU 54 G12A 1 mTt49 1673 UAUCAAUACAGUGGAUGAUUUGUAU 67 G10A 1 mTt50 1673 UAUCAAUACGUAGAUGAUUUGUAU 17 G12A 1 mTt51 1674 UAUCAAUACAUAGAUGAUUUGUAU 0 A10G 1 mTt52 1674 UAUCAAUACAUGGAUGAUUUGUAU 62 A12G 1 mTt53 1375 GAAGGCUGCAAACAAAUA 90 A6U/U7G 2 mTt54 1542 AAGUUCAUAAUGUCUGGGCUA 85 A5U 1 mTt55 1542 AAGUACACAAUGUCUGGGCUA 83 U8C 1 mTt56 1542 AGGCACAUAAUCAUCUGGGCUA 55 A2G/U4C/G12C 3 mTt57 1540 UAAAGAAAUUAGCAAUUACAC 90 A1U/G3A/G10A/A11G 4 mTt58 1539 AAAUAUCUGGGGAAUCUUCUA 55 U10G/C15U/G18U 3 mTt59 1542 AAGUACACAAUGUCUGGGCUA 83 U7C 1 mTt60 1098 AACAGUACUAAAUGGAGAA 54 G1A 1 mTt61 1098 GGCAGUACUAAAUGGAGAA 64 A2G 1 mTt62 1098 GAUAGUACUAAAUGGAGAA 51 C3U 1 mTt63 1098 GACGGUACUAAAUGGAGAA 22 A4G 1 mTt64 1098 GACAAUACUAAAUGGAGAA 11 G5A 1 mTt65 1098 GACAGCACUAAAUGGAGAA 7 U6C 1 mTt66 1098 GACAGUGCUAAAUGGAGAA 30 A7G 1 mTt67 1098 GACAGUAUUAAAUGGAGAA 3 C8U 1 mTt68 1098 GACAGUACCAAAUGGAGAA 0 U9C 1 mTt69 1098 GACAGUACUGAAUGGAGAA 0 A10G 1 mTt70 1098 GACAGUACUAGAUGGAGAA 86 A11G 1 mTt71 1098 GACAGUACUAAGUGGAGAA 85 A12G 1 mTt72 1098 GACAGUACUAAAUAGAGAA 2 G14A 1 mTt73 1098 GACAGUACUAAAUGAAGAA 8 G15A 1 mTt74 1098 GACAGUACUAAAUGGGGAA 56 A16G 1 mTt75 1098 GACAGUACUAAAUGGAGGA 63 A18G 1

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