A server for predicting and designing
interferon-gamma inducing epitopes

Scanning Protein or Antigen for IFN epitopes

This modeule is design for predicting INF-gamma inducing regions in a protein or antigen. User can submit amino acid sequence of a protein or antigen. This server will generate all possible overlapping peptides (of length or window selected by user) form antigen, Server will predict IFN epitope in these overlapping peptides. This server also allow user to rank these peptides/epitopes based on their SVM score. In summary this module identify best antigenic regions or IFN epitope in a query antigen sequence that can induce IFN-gamma. Help

Name of query protein or Job Name(Optional) :
Email address (Optional) :
Please paste/type amino acid sequence of your query antigen/protein in FASTA format
OR Upload file containg amino acid sequence of protein:
(Note : Please upload file in fasta format only)
Please select length of overlapping peptides/epitopes or window length           
Select approach for predicting epitope in protein (for deatil see algoritham section)     

   Motif based        SVM based          Motif and SVM hybrid     
Select the Model for prediction     

   IFN-gamma versus Non IFN-gamma         IFN-gamma versus other cytokine         IFN-gamma versus random