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MHCBench  

Evaluation of MHC Binding Peptide Prediction Algorithms

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RELATED LINKS

DATABASE

  • MHCPEP A collection of MHC binding peptides.
  • MHCBN A comprehensive data base of MHC binding and non-binding peptides peptides.
  • SYFPEITHI A Database of MHC ligands and peptide motifs with approx. 2000 peptide sequences (Ver. 1.0) .
  • ImMunoGeneTics database Home page A database of  human MHC molecules referred to as HLA (Human Leukocyte Antigens).

PREDICTION METHODS
  • SYFPEITHI  MHC binding peptide prediction Server.
  • MAPPP : MHC-I binding prediction Server.CURRENTLY NON-FUNCTIONAL
  • Prediction of MHC Binding peptide A Server with three most commonly used prediction algorithms (ANN, Hidden Markov Models and quantitative matrix).ONLY DEMO-MODE IS AVAILABLE
  • NetChop1.0: Prediction of proteiosome cleavage sites.
  • EpiMatrix/TBgenome : EpiMatrix is a computer-driven prediction algorithm for predicting T-cell epitopes.
  • BIMAS: analysis MHC Class-I binding peptides based on coefficient tables deduced from the published literature by Dr. Kenneth Parker.
  • ProPred-I: A server for predicting the promiscuous or allele specific class-I MHC binding peptides. It employs 47 matrices collected form literature specific for 47 MHC class-I alleles
  • ProPred-II: A server for predicting the promiscuous MHC classs-II binding peptides. The server uses matrices for 51 HLA-DR alleles.

BIOINFORMATICS WEB RESOURCES

 

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