Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR011986339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]35PRTASVVIW HLA-B*2702 1 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6802 10
VIR011987339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]36RTASVVIWY HLA-A1,HLA-A3,HLA-B*0702,HLA-B*2702,HLA-B*3501,HLA-B*4403,HLA-B*5301,HLA-B*5801,HLA-B62,HLA-Cw*0702 10 HLA-A1,HLA-A*0206,HLA-A3,HLA-B*51,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01,HLA-B*2902,HLA-A*3301,HLA-B44,HLA-A*6801 18
VIR011996339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]45SPELGDTAA HLA-B*0702,HLA-B*51,HLA-B*5101,HLA-B*5301,HLA-B*5401,MHC-Ld 6 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR011998339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]47ELGDTAAVL HLA-A*0205,HLA-A2.1,HLA-B*3501,HLA-B*3801,HLA-B*3902,HLA-B62,HLA-B7,HLA-B8,HLA-Cw*0401 9 HLA-A2,HLA-A*0201,HLA-A*0203,HLA-A*0206,HLA-A3,HLA-A*0301,HLA-A2.1,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 17
VIR012003339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]52AAVLSAITK HLA-A*1101,HLA-A3,HLA-A68.1 3 HLA-A*2402,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR012011339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]60KAQHVPAEL HLA-A*0205,HLA-A24,HLA-B*2705,HLA-B*3501,HLA-B*3701,HLA-B*3902,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801,HLA-B60,HLA-B7,MHC-Dd,MHC-Kb 14 HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR012022339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]71ARAPHSAGV HLA-B14,HLA-B*2702,HLA-B*2705 3 HLA-B*51,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301,HLA-A*6801 12
VIR012029339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]78GVRGVGVVR HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1 6 HLA-B*51,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 11
VIR012030339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]79VRGVGVVRK HLA-B*2702,HLA-B*2705 2 HLA-A24,HLA-B14,HLA-B*3501,HLA-B*5301,HLA-B*5401,HLA-B*51,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01,HLA-B*2704 18
VIR012031339631031 YP 004722673.1 ATPaseP[MycobacteriumafricanumGM041182]80RGVGVVRKI HLA-B*0702,HLA-B*3701,HLA-B*4403,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5201,MHC-Db,MHC-Dd,MHC-Kd,MHC-Kk 11 HLA-B*2705,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
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