Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR002824339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]167EQHAAVLAA HLA-B*0702,HLA-B62 2
VIR002825339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]168QHAAVLAAY HLA-B*3801,HLA-Cw*0702 2
VIR002828339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]171AVLAAYPGH HLA-A68.1 1
VIR002829339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]172VLAAYPGHI HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*51,HLA-B*5301,HLA-B62,MHC-Kk 8
VIR002830339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]173LAAYPGHIA HLA-B40,HLA-B*51,HLA-B*5101,HLA-B*5103 4
VIR002831339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]174AAYPGHIAR HLA-A1,HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1,HLA-B*2705 8
VIR002832339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]175AYPGHIARM HLA-A24,HLA-Cw*0401,MHC-Db,MHC-Dd,MHC-Kb,MHC-Kd 6
VIR002833339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]176YPGHIARMF HLA-B*0702,HLA-B*3501,HLA-B*3701,HLA-B*3801,HLA-B*4403,HLA-B*51,HLA-B*5201,HLA-B*5301,HLA-B*5401,HLA-B*5801,HLA-B62,HLA-Cw*0401,HLA-Cw*0702,MHC-Ld 14
VIR002835339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]178GHIARMFGL HLA-B14,HLA-B*3801,HLA-B*3901,HLA-B*3902,HLA-Cw*0301,MHC-Dd 6
VIR002836339630277 YP 004721919.1 zincmetalloprotease[MycobacteriumafricanumGM041182]179HIARMFGLV HLA-A*0205,HLA-B*0702 2
Showing 1 to 10 of 1,000 entries