Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR007144339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]192TKFILAEIF HLA-A20 Cattle,HLA-B*3902,HLA-B*5201,HLA-B*5401 4
VIR007146339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]194FILAEIFPG HLA-B*51,HLA-B*5401 2
VIR007148339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]196LAEIFPGGW HLA-A1,HLA-B*51,HLA-B*5801 3
VIR007149339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]197AEIFPGGWL HLA-B*2705,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B60,HLA-B61,HLA-Cw*0301,MHC-Db,MHC-Kk 9
VIR007152339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]200FPGGWLPSI HLA-A2.1,HLA-B*0702,HLA-B*3501,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B*5401,HLA-B7,HLA-Cw*0401,MHC-Kk,MHC-Ld 13
VIR007154339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]202GGWLPSIPT HLA-B*5102 1
VIR007155339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]203GWLPSIPTV HLA-B*5103,HLA-Cw*0401,MHC-Kd 3
VIR007156339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]204WLPSIPTVH HLA-A2.1,HLA-B*51,HLA-B*5401 3
VIR007157339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]205LPSIPTVHE HLA-B*51,HLA-B*5301 2
VIR007158339630539 YP 004722181.1 mycolicacidsynthase[MycobacteriumafricanumGM041182]206PSIPTVHEY HLA-A1,HLA-B*4403,HLA-B*5801 3
Showing 1 to 10 of 1,000 entries