Strain Card


The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
StrainM_bovis_BCG_str_Tokyo_172
Description
CategoryVaccine strain
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3944
B cell epitopes (IEDB)88
T cell epitopes (IEDB)211
MHC binder (IEDB)347
No. of Vaccine Target135
B cell prediction (LBtope)4275
Prediction of MHC class II binders (Propred)8214
MHC class I prediction (Propred1)37756
CTL epitope prediction (CTLpred)8948
Prediction of Interferon-gamma inducing peptides (IFNepitope)22859
Prediction of IL4 inducing peptides (IL4pred)35361