Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThe sequences are related to the Mycobacterium canettii strain (EMBL accession number PRJEA68135) recently deposited by the Sanger Institute, which is also included in this collaborative project.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3981
B cell epitopes (IEDB)66
T cell epitopes (IEDB)149
MHC binder (IEDB)223
No. of Vaccine Target108
B cell prediction (LBtope)3209
Prediction of MHC class II binders (Propred)6178
MHC class I prediction (Propred1)28777
CTL epitope prediction (CTLpred)6806
Prediction of Interferon-gamma inducing peptides (IFNepitope)17473
Prediction of IL4 inducing peptides (IL4pred)26801