Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionMycobacterium kansasii ATCC 12478 (Hauduroy) is a well-studied clinical isolate and will be used for comparative analysis.Mycobacterium kansasii is a photochromic (produces pigment when exposed to light) species which causes a tuberculosis-like disease.
CategoryNon tuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins5913
B cell epitopes (IEDB)39
T cell epitopes (IEDB)117
MHC binder (IEDB)181
No. of Vaccine Target8
B cell prediction (LBtope)140
Prediction of MHC class II binders (Propred)305
MHC class I prediction (Propred1)1334
CTL epitope prediction (CTLpred)314
Prediction of Interferon-gamma inducing peptides (IFNepitope)753
Prediction of IL4 inducing peptides (IL4pred)1347