Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain (TN) was passaged through an armadillo in Tamil Nadu, India, and is the only strain of this species that has been successfully produced in quantities large enough for sequencing and biochemical analyses as the nine-banded armadillo was used as a surrogate host.
CategoryNon tuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins1605
B cell epitopes (IEDB)15
T cell epitopes (IEDB)56
MHC binder (IEDB)97
No. of Vaccine Target1
B cell prediction (LBtope)25
Prediction of MHC class II binders (Propred)61
MHC class I prediction (Propred1)321
CTL epitope prediction (CTLpred)77
Prediction of Interferon-gamma inducing peptides (IFNepitope)161
Prediction of IL4 inducing peptides (IL4pred)311