Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain is a well-studied human isolate that is susceptible to a relatively wider range of antibiotics than other M. marinum isolates and thus has a potential to be easier to use in genetic and molecular biological studies.
CategoryNon tuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins5452
B cell epitopes (IEDB)47
T cell epitopes (IEDB)102
MHC binder (IEDB)172
No. of Vaccine Target4
B cell prediction (LBtope)68
Prediction of MHC class II binders (Propred)131
MHC class I prediction (Propred1)640
CTL epitope prediction (CTLpred)149
Prediction of Interferon-gamma inducing peptides (IFNepitope)354
Prediction of IL4 inducing peptides (IL4pred)654