Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionMycobacterium smegmatis is a non-pathogenic, rapidly growing relative of pathogenic mycobacteria that cause tuberculosis or leprosy. Some studies that would be difficult or impossible in the pathogenic strains can often be performed in M. smegmatis.
CategoryNon tuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins7057
B cell epitopes (IEDB)26
T cell epitopes (IEDB)40
MHC binder (IEDB)104
Vaccine TargetNo