Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionAnalysis of an TB outbreak in Northern Germany.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3994
B cell epitopes (IEDB)95
T cell epitopes (IEDB)230
MHC binder (IEDB)361
No. of Vaccine Target166
B cell prediction (LBtope)5298
Prediction of MHC class II binders (Propred)9711
MHC class I prediction (Propred1)45423
CTL epitope prediction (CTLpred)10684
Prediction of Interferon-gamma inducing peptides (IFNepitope)27570
Prediction of IL4 inducing peptides (IL4pred)42789